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Functions
cyclic_peptide Namespace Reference

Functions

BooleanOptionKey const cyclic_peptide ("cyclic_peptide")
 
StringOptionKey const rand_checkpoint_file ("cyclic_peptide:rand_checkpoint_file")
 
StringOptionKey const checkpoint_file ("cyclic_peptide:checkpoint_file")
 
StringOptionKey const checkpoint_job_identifier ("cyclic_peptide:checkpoint_job_identifier")
 
StringOptionKey const default_rama_sampling_table ("cyclic_peptide:default_rama_sampling_table")
 
StringVectorOptionKey const rama_sampling_table_by_res ("cyclic_peptide:rama_sampling_table_by_res")
 
StringOptionKey const sequence_file ("cyclic_peptide:sequence_file")
 
IntegerOptionKey const genkic_closure_attempts ("cyclic_peptide:genkic_closure_attempts")
 
IntegerOptionKey const genkic_min_solution_count ("cyclic_peptide:genkic_min_solution_count")
 
BooleanOptionKey const cyclic_permutations ("cyclic_peptide:cyclic_permutations")
 
BooleanOptionKey const use_rama_filter ("cyclic_peptide:use_rama_filter")
 
RealOptionKey const rama_cutoff ("cyclic_peptide:rama_cutoff")
 
RealOptionKey const high_hbond_weight_multiplier ("cyclic_peptide:high_hbond_weight_multiplier")
 
RealOptionKey const min_genkic_hbonds ("cyclic_peptide:min_genkic_hbonds")
 
RealOptionKey const min_final_hbonds ("cyclic_peptide:min_final_hbonds")
 
RealOptionKey const hbond_energy_cutoff ("cyclic_peptide:hbond_energy_cutoff")
 
IntegerOptionKey const fast_relax_rounds ("cyclic_peptide:fast_relax_rounds")
 
BooleanOptionKey const count_sc_hbonds ("cyclic_peptide:count_sc_hbonds")
 
BooleanOptionKey const require_disulfides ("cyclic_peptide:require_disulfides")
 
RealOptionKey const disulf_cutoff_prerelax ("cyclic_peptide:disulf_cutoff_prerelax")
 
RealOptionKey const disulf_cutoff_postrelax ("cyclic_peptide:disulf_cutoff_postrelax")
 
RealVectorOptionKey const user_set_alpha_dihedrals ("cyclic_peptide:user_set_alpha_dihedrals")
 
RealOptionKey const user_set_alpha_dihedral_perturbation ("cyclic_peptide:user_set_alpha_dihedral_perturbation")
 

Function Documentation

StringOptionKey const cyclic_peptide::checkpoint_file ( "cyclic_peptide:checkpoint_file"  )
StringOptionKey const cyclic_peptide::checkpoint_job_identifier ( "cyclic_peptide:checkpoint_job_identifier"  )
BooleanOptionKey const cyclic_peptide::count_sc_hbonds ( "cyclic_peptide:count_sc_hbonds"  )
BooleanOptionKey const cyclic_peptide::cyclic_peptide ( "cyclic_peptide"  )
BooleanOptionKey const cyclic_peptide::cyclic_permutations ( "cyclic_peptide:cyclic_permutations"  )
StringOptionKey const cyclic_peptide::default_rama_sampling_table ( "cyclic_peptide:default_rama_sampling_table"  )
RealOptionKey const cyclic_peptide::disulf_cutoff_postrelax ( "cyclic_peptide:disulf_cutoff_postrelax"  )
RealOptionKey const cyclic_peptide::disulf_cutoff_prerelax ( "cyclic_peptide:disulf_cutoff_prerelax"  )
IntegerOptionKey const cyclic_peptide::fast_relax_rounds ( "cyclic_peptide:fast_relax_rounds"  )
IntegerOptionKey const cyclic_peptide::genkic_closure_attempts ( "cyclic_peptide:genkic_closure_attempts"  )
IntegerOptionKey const cyclic_peptide::genkic_min_solution_count ( "cyclic_peptide:genkic_min_solution_count"  )
RealOptionKey const cyclic_peptide::hbond_energy_cutoff ( "cyclic_peptide:hbond_energy_cutoff"  )
RealOptionKey const cyclic_peptide::high_hbond_weight_multiplier ( "cyclic_peptide:high_hbond_weight_multiplier"  )
RealOptionKey const cyclic_peptide::min_final_hbonds ( "cyclic_peptide:min_final_hbonds"  )
RealOptionKey const cyclic_peptide::min_genkic_hbonds ( "cyclic_peptide:min_genkic_hbonds"  )
RealOptionKey const cyclic_peptide::rama_cutoff ( "cyclic_peptide:rama_cutoff"  )
StringVectorOptionKey const cyclic_peptide::rama_sampling_table_by_res ( "cyclic_peptide:rama_sampling_table_by_res"  )
StringOptionKey const cyclic_peptide::rand_checkpoint_file ( "cyclic_peptide:rand_checkpoint_file"  )
BooleanOptionKey const cyclic_peptide::require_disulfides ( "cyclic_peptide:require_disulfides"  )
StringOptionKey const cyclic_peptide::sequence_file ( "cyclic_peptide:sequence_file"  )
BooleanOptionKey const cyclic_peptide::use_rama_filter ( "cyclic_peptide:use_rama_filter"  )
RealOptionKey const cyclic_peptide::user_set_alpha_dihedral_perturbation ( "cyclic_peptide:user_set_alpha_dihedral_perturbation"  )
RealVectorOptionKey const cyclic_peptide::user_set_alpha_dihedrals ( "cyclic_peptide:user_set_alpha_dihedrals"  )