zinc2_homodimer_setup Class Reference

Inheritance diagram for zinc2_homodimer_setup:

Public Member Functions
	zinc2_homodimer_setup ()
virtual	~zinc2_homodimer_setup ()
virtual void	apply (Pose &pose)
virtual Pose	setup_grafted_monomer (Pose &pose)
virtual Pose	setup_homodimer (Pose &grafted_monomer)
virtual void	rollmove_to_inverse_C2_symmetry (Pose &homodimer)
virtual void	setup_metalsites (Pose &homodimer)
virtual void	setup_filter_clashes ()
virtual void	gridsearch_symmetric_alignments (Pose &homodimer)
virtual void	filter_metal_geom (Pose &homodimer, std::string angle_tag)
virtual void	filter_clashes (Pose &homodimer, std::string angle_tag)
virtual std::string	get_name () const

Private Attributes
Pose	match1_
Pose	match2_
Pose	homodimer_with_matches_
Size	zinc1_res_
Size	zinc2_res_
utility::vector1 < protocols::metal_interface::MetalSiteResidueOP >	msr_1_
utility::vector1 < protocols::metal_interface::MetalSiteResidueOP >	msr_2_
protocols::analysis::InterfaceAnalyzerMoverOP	interface_analyzer_
core::scoring::ScoreFunctionOP	scorefunction_

Detailed Description

Definition at line 82 of file zinc2_homodimer_setup.cc.

Constructor & Destructor Documentation

zinc2_homodimer_setup::zinc2_homodimer_setup ( )

inline

Definition at line 85 of file zinc2_homodimer_setup.cc.

References match1, match2, basic::options::option, TR(), and value.

virtual zinc2_homodimer_setup::~zinc2_homodimer_setup ( )

inlinevirtual

Definition at line 119 of file zinc2_homodimer_setup.cc.

Member Function Documentation

virtual void zinc2_homodimer_setup::apply ( Pose &  pose )

inlinevirtual

Definition at line 123 of file zinc2_homodimer_setup.cc.

References basic::options::OptionKeys::willmatch::homodimer, and TR().

Referenced by src.protocols.jd2.RosettaScriptWrapper::apply_to_failure().

virtual void zinc2_homodimer_setup::filter_clashes ( Pose &  homodimer, std::string  angle_tag  )

inlinevirtual

Definition at line 368 of file zinc2_homodimer_setup.cc.

References utility::file::FileName::base(), ddG_centroid_cutoff, numeric::xyzVector< typename >::distance(), utility::file::FileName::name(), name, basic::options::option, TR(), value, and zn_zn_distance_cutoff.

virtual void zinc2_homodimer_setup::filter_metal_geom ( Pose &  homodimer, std::string  angle_tag  )

inlinevirtual

Definition at line 306 of file zinc2_homodimer_setup.cc.

References numeric::angle_of(), numeric::conversions::degrees(), basic::options::OptionKeys::frags::j, basic::options::option, p1_1, p1_2, p1_3, tetrahedral_angle_sumsq_cutoff, TR(), and value.

virtual std::string zinc2_homodimer_setup::get_name ( ) const

inlinevirtual

Definition at line 406 of file zinc2_homodimer_setup.cc.

virtual void zinc2_homodimer_setup::gridsearch_symmetric_alignments ( Pose &  homodimer )

inlinevirtual

Definition at line 275 of file zinc2_homodimer_setup.cc.

References basic::options::OptionKeys::hotspot::angle, angle_rotation_increment, and basic::options::option.

virtual void zinc2_homodimer_setup::rollmove_to_inverse_C2_symmetry ( Pose &  homodimer )

inlinevirtual

Definition at line 208 of file zinc2_homodimer_setup.cc.

References numeric::cross_product(), and numeric::midpoint().

virtual void zinc2_homodimer_setup::setup_filter_clashes ( )

inlinevirtual

Definition at line 256 of file zinc2_homodimer_setup.cc.

References basic::options::OptionKeys::frags::scoring::scoring.

virtual Pose zinc2_homodimer_setup::setup_grafted_monomer ( Pose &  pose )

inlinevirtual

Definition at line 154 of file zinc2_homodimer_setup.cc.

References TR().

virtual Pose zinc2_homodimer_setup::setup_homodimer ( Pose &  grafted_monomer )

inlinevirtual

Definition at line 189 of file zinc2_homodimer_setup.cc.

References basic::options::OptionKeys::willmatch::homodimer, and TR().

virtual void zinc2_homodimer_setup::setup_metalsites ( Pose &  homodimer )

inlinevirtual

Definition at line 233 of file zinc2_homodimer_setup.cc.

References TR().

Member Data Documentation

Pose zinc2_homodimer_setup::homodimer_with_matches_

private

Definition at line 413 of file zinc2_homodimer_setup.cc.

protocols::analysis::InterfaceAnalyzerMoverOP zinc2_homodimer_setup::interface_analyzer_

private

Definition at line 423 of file zinc2_homodimer_setup.cc.

Pose zinc2_homodimer_setup::match1_

private

Definition at line 411 of file zinc2_homodimer_setup.cc.

Pose zinc2_homodimer_setup::match2_

private

Definition at line 412 of file zinc2_homodimer_setup.cc.

utility::vector1< protocols::metal_interface::MetalSiteResidueOP > zinc2_homodimer_setup::msr_1_

private

Definition at line 420 of file zinc2_homodimer_setup.cc.

utility::vector1< protocols::metal_interface::MetalSiteResidueOP > zinc2_homodimer_setup::msr_2_

private

Definition at line 421 of file zinc2_homodimer_setup.cc.

core::scoring::ScoreFunctionOP zinc2_homodimer_setup::scorefunction_

private

Definition at line 424 of file zinc2_homodimer_setup.cc.

Size zinc2_homodimer_setup::zinc1_res_

private

Definition at line 417 of file zinc2_homodimer_setup.cc.

Size zinc2_homodimer_setup::zinc2_res_

private

Definition at line 418 of file zinc2_homodimer_setup.cc.

---

The documentation for this class was generated from the following file:

• src/apps/public/design/zinc2_homodimer_setup.cc