conformation Directory Reference

Directory dependency graph for conformation:

Directories
directory	membrane
directory	orbitals
directory	parametric
directory	signals
directory	symmetry

Files
file	AbstractRotamerTrie.cc [code]
	Auto-generated serialization template functions.
file	AbstractRotamerTrie.fwd.hh [code]
	Forward declaration of the AbstractRotamerTrie class, defined in the conformation layer.
file	AbstractRotamerTrie.hh [code]
	Base class from which all Tries will derive; this class is a handle for the tries that will be defined in core/scoring, but which have to be stored by the RotamerSetBase class defined in core/conformation.
file	Atom.cc [code]
	Method definitions for conformation::Atom.
file	Atom.fwd.hh [code]
	Class declaration for conformation::Atom.
file	Atom.hh [code]
	Class definitions for conformation::Atom.
file	AtomGraph.cc [code]
file	AtomGraph.fwd.hh [code]
file	AtomGraph.hh [code]
file	AtomGraphData.fwd.hh [code]
file	AtomGraphData.hh [code]
file	Conformation.cc [code]
	Method definitions for the Conformation class.
file	Conformation.fwd.hh [code]
	forward declaration for Conformation.hh
file	Conformation.hh [code]
	conformation container
file	find_neighbors.fwd.hh [code]
file	find_neighbors.hh [code]
file	PointGraph.cc [code]
	Graph for detecting neighbors; vertices store points, edges store square distances.
file	PointGraph.fwd.hh [code]
	Graph for detecting neighbors; vertices store points, edges store square distances.
file	PointGraph.hh [code]
	Graph for detecting neighbors; vertices store points, edges store square distances.
file	PointGraphData.cc [code]
	Serlialization routines for the two types templated upon to define the PointGraph.
file	PointGraphData.fwd.hh [code]
file	PointGraphData.hh [code]
	classes to work with UpperEdgeGraph for fast neighbor detection
file	ppo_torsion_bin.cc [code]
file	ppo_torsion_bin.fwd.hh [code]
	An enumeration to represent a binning of the phi/psi/omega torsions.
file	ppo_torsion_bin.hh [code]
	Functions for assigning and manipulating the phi/psi/omega torsion bins.
file	PseudoBond.cc [code]
file	PseudoBond.fwd.hh [code]
file	PseudoBond.hh [code]
file	Residue.cc [code]
	Method definitions for the Residue class.
file	Residue.functions.cc [code]
	Implementation of non-member functions that operate on Residue objects.
file	Residue.functions.hh [code]
	Header file for non-member functions that operate on Residue objects.
file	Residue.fwd.hh [code]
file	Residue.hh [code]
	Method declarations and simple accessor definitions for the Residue class.
file	residue_datacache.hh [code]
	enum for storing data in the Residue's datacache
file	ResidueFactory.cc [code]
file	ResidueFactory.hh [code]
file	ResidueKinWriter.cc [code]
	Class to write kinemage-formatted output for Residue and Conformation.
file	ResidueKinWriter.fwd.hh [code]
file	ResidueKinWriter.hh [code]
	Class to write kinemage-formatted output for Residue and Conformation.
file	ResidueMatcher.cc [code]
file	ResidueMatcher.fwd.hh [code]
file	ResidueMatcher.hh [code]
file	RotamerSetBase.cc [code]
	RotamerSetBase class implementation.
file	RotamerSetBase.fwd.hh [code]
file	RotamerSetBase.hh [code]
	Abstract base class for a class that holds disembodied Residues (ie not contained within a Pose) as Rotamers.
file	RotamerSetCacheableDataType.hh [code]
	enum for the DataCache within the RotamerSet class; EnergyMethods in core/scoring forward-declare themselves here if they intend to cache data within the the RotamerSet.
file	UltraLightResidue.cc [code]
file	UltraLightResidue.fwd.hh [code]
file	UltraLightResidue.hh [code]
	an extremely light residue class used for fast direct cartesian space transforms on ligands.
file	util.cc [code]
file	util.hh [code]