dna Directory Reference

Directory dependency graph for dna:

Files
file	DesignProteinBackboneAroundDNA.cc [code]
	performs a round flexible backbone sampling/design. (Interim(?) encapsulation of some loose code in a mover class.)
file	DesignProteinBackboneAroundDNA.fwd.hh [code]
file	DesignProteinBackboneAroundDNA.hh [code]
	performs a round flexible backbone sampling/design. (Interim(?) encapsulation of some loose code in a mover class.)
file	DesignProteinBackboneAroundDNACreator.hh [code]
file	DnaChains.cc [code]
file	DnaChains.fwd.hh [code]
file	DnaChains.hh [code]
	a descriptive but lightweight class to keep track of (usually basepaired) dna chains
file	DnaDesignDef.cc [code]
file	DnaDesignDef.fwd.hh [code]
file	DnaDesignDef.hh [code]
file	DnaInterfaceFinder.cc [code]
file	DnaInterfaceFinder.fwd.hh [code]
file	DnaInterfaceFinder.hh [code]
file	DnaInterfaceMinMover.cc [code]
file	DnaInterfaceMinMover.fwd.hh [code]
file	DnaInterfaceMinMover.hh [code]
	A mover that minimizes protein residues near DNA.
file	DnaInterfaceMinMoverCreator.hh [code]
file	DnaInterfaceMultiStateDesign.cc [code]
file	DnaInterfaceMultiStateDesign.fwd.hh [code]
file	DnaInterfaceMultiStateDesign.hh [code]
file	DnaInterfaceMultiStateDesignCreator.hh [code]
file	DnaInterfacePacker.cc [code]
file	DnaInterfacePacker.fwd.hh [code]
file	DnaInterfacePacker.hh [code]
	Intended to perform anything one would want to do in a DNA interface that uses a single incarnation of the RotamerSets/InteractionGraph combo.
file	DnaInterfacePackerCreator.hh [code]
file	DNAParameters.cc [code]
	A class to query for base-paired partners as well as base pair and base step parameters.
file	DNAParameters.fwd.hh [code]
file	DNAParameters.hh [code]
	A class to query for base-paired partners as well as base pair and base step parameters.
file	PDBOutput.cc [code]
file	PDBOutput.fwd.hh [code]
file	PDBOutput.hh [code]
file	RestrictDesignToProteinDNAInterface.cc [code]
file	RestrictDesignToProteinDNAInterface.fwd.hh [code]
file	RestrictDesignToProteinDNAInterface.hh [code]
	When operated on a PackerTask, pack/design is limited to the protein-DNA interface.
file	RestrictDesignToProteinDNAInterfaceCreator.hh [code]
file	RotamerDNAHBondFilter.cc [code]
	filters rotamers for contact to DNA in an -ex dependent manner
file	RotamerDNAHBondFilter.fwd.hh [code]
file	RotamerDNAHBondFilter.hh [code]
	filters rotamers for contact to DNA in an -ex dependent manner
file	SeparateDnaFromNonDna.cc [code]
file	SeparateDnaFromNonDna.fwd.hh [code]
file	SeparateDnaFromNonDna.hh [code]
file	SeparateDnaFromNonDnaCreator.hh [code]
file	typedefs.hh [code]
file	util.cc [code]
file	util.hh [code]
file	WatsonCrickRotamerCouplings.cc [code]
file	WatsonCrickRotamerCouplings.fwd.hh [code]
file	WatsonCrickRotamerCouplings.hh [code]
	When operated on a PackerTask, adds RotamerCouplings to it that will trigger the use of a FixbbCoupledRotamerAnnealer by pack_rotamers, which will make base-paired DNA rotamer substitutions.
file	WatsonCrickRotamerCouplingsCreator.hh [code]