aa_composition_energy Directory Reference

Directory dependency graph for aa_composition_energy:

Files
file	AACompositionConstraint.cc [code]
	A constraint for constraining sequences to have a desired amino acid composition, analogous to a geometric constraint.
file	AACompositionConstraint.fwd.hh [code]
	Forward declarations for a constraint for constraining sequences to have a desired amino acid composition, analogous to a geometric constraint.
file	AACompositionConstraint.hh [code]
	Headers for a constraint for constraining sequences to have a desired amino acid composition, analogous to a geometric constraint.
file	AACompositionEnergy.cc [code]
	An EnergyMethod that penalizes deviation from a desired amino acid composition.
file	AACompositionEnergy.fwd.hh [code]
	Forward declarations for an EnergyMethod that penalizes deviation from a desired amino acid composition.
file	AACompositionEnergy.hh [code]
	Headers for an EnergyMethod that penalizes deviation from a desired amino acid composition.
file	AACompositionEnergyCreator.hh [code]
	Creator for an EnergyMethod that penalizes deviation from a desired amino acid composition.
file	AACompositionEnergySetup.cc [code]
	A helper for the EnergyMethod that penalizes deviation from a desired amino acid composition.
file	AACompositionEnergySetup.fwd.hh [code]
	Forward declarations for a helper class that stores the setup information for the AACompositionEnergy score term.
file	AACompositionEnergySetup.hh [code]
file	SequenceConstraint.cc [code]
	A base class for constraining sequences, analogous to a geometric constraint.
file	SequenceConstraint.fwd.hh [code]
	Forward declarations for base class for constraining sequences, analogous to a geometric constraint.
file	SequenceConstraint.hh [code]
	Headers for a constraint for constraining sequences to have a desired amino acid composition, analogous to a geometric constraint.