toolbox Directory Reference

Directory dependency graph for toolbox:

Directories
directory	match_enzdes_util
directory	pose_manipulation
directory	pose_metric_calculators
directory	rigid_body
directory	rotamer_set_operations
directory	sample_around
directory	task_operations

Files
file	AtomID_Mapper.cc [code]
file	AtomID_Mapper.fwd.hh [code]
file	AtomID_Mapper.hh [code]
file	AtomLevelDomainMap.cc [code]
file	AtomLevelDomainMap.fwd.hh [code]
	AtomLevelDomainMap forward declarations header.
file	AtomLevelDomainMap.hh [code]
file	CalcInterNeighborGroup.cc [code]
	This is meant for finding interfaces between protein domains - like protein-protein interfaces but within a protein. It's more flexible than that, though. You define groups of residues within a protein (say, the N and C terminal domains). You then define which pairs of groups you are interested in. This calculator returns the union of the sets of residues at the interfaces between these domains/groups. This calculator contains a superset of the functionality of some of the other calculators, but is less efficient in simple cases. The pose does NOT have to have been scored.
file	CalcInterNeighborGroup.fwd.hh [code]
file	CalcInterNeighborGroup.hh [code]
	This calculator is meant for finding interfaces between protein domains - like protein-protein interfaces but within a protein. It's more flexible than that, though. You define groups of residues within a protein (say, the N and C terminal domains). You then define which pairs of groups you are interested in. This calculator returns the union of the sets of residues at the interfaces between these domains/groups. This calculator contains a superset of the functionality of some of the other calculators, but is less efficient in simple cases. The pose does NOT have to have been scored.
file	Cluster.cc [code]
file	Cluster.hh [code]
file	Cluster.impl.hh [code]
	template implementation for clustering of silentstructs that are provided by iterators
file	DecoySetEvaluation.cc [code]
file	DecoySetEvaluation.fwd.hh [code]
file	DecoySetEvaluation.hh [code]
file	DecoySetEvaluation.impl.hh [code]
file	IGEdgeReweighters.cc [code]
file	IGEdgeReweighters.hh [code]
file	InteratomicVarianceMatrix.cc [code]
file	InteratomicVarianceMatrix.hh [code]
file	KCluster.cc [code]
file	KCluster.fwd.hh [code]
file	KCluster.hh [code]
	Fast clustering algorithm for large silent file.
file	NetworkAlgorithms.cc [code]
	calculate various network properties from poses
file	NetworkAlgorithms.fwd.hh [code]
	FOrward header for class that analyzes properties of residue networks.
file	NetworkAlgorithms.hh [code]
	Computes network properties of a pose.
file	PyReturnValuePolicyTest.hh [code]
	A few functions test how PyRosetta handle boost ReturnValuePolicy.
file	superimpose.cc [code]
file	superimpose.hh [code]