constraints Directory Reference

Directory dependency graph for constraints:

Files
file	AmbiguousConstraint.cc [code]
	contains declarations for a type of constraint that holds a number of constraints
file	AmbiguousConstraint.fwd.hh [code]
file	AmbiguousConstraint.hh [code]
	contains declarations for a type of constraint that holds multiple other
file	AmbiguousNMRConstraint.cc [code]
	contains declarations for a type of constraint that holds a number of constraints
file	AmbiguousNMRConstraint.fwd.hh [code]
file	AmbiguousNMRConstraint.hh [code]
	contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
file	AmbiguousNMRDistanceConstraint.cc [code]
file	AmbiguousNMRDistanceConstraint.fwd.hh [code]
file	AmbiguousNMRDistanceConstraint.hh [code]
file	AngleConstraint.cc [code]
	Definition of AngularConstraints.
file	AngleConstraint.fwd.hh [code]
file	AngleConstraint.hh [code]
file	AtomPairConstraint.cc [code]
file	AtomPairConstraint.fwd.hh [code]
file	AtomPairConstraint.hh [code]
file	BackboneStubConstraint.cc [code]
file	BackboneStubConstraint.fwd.hh [code]
file	BackboneStubConstraint.hh [code]
file	BackboneStubLinearConstraint.cc [code]
file	BackboneStubLinearConstraint.fwd.hh [code]
file	BackboneStubLinearConstraint.hh [code]
file	BasicConstraintCreators.cc [code]
file	BasicConstraintCreators.hh [code]
file	BigBinConstraint.cc [code]
file	BigBinConstraint.hh [code]
file	BoundConstraint.cc [code]
file	BoundConstraint.fwd.hh [code]
file	BoundConstraint.hh [code]
file	ConstantConstraint.cc [code]
file	ConstantConstraint.fwd.hh [code]
file	ConstantConstraint.hh [code]
file	Constraint.cc [code]
file	Constraint.fwd.hh [code]
file	Constraint.hh [code]
	Base class definition for Constraint class hierarchy.
file	ConstraintCreator.cc [code]
file	ConstraintCreator.fwd.hh [code]
file	ConstraintCreator.hh [code]
	Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
file	ConstraintEnergyContainer.cc [code]
file	ConstraintEnergyContainer.fwd.hh [code]
file	ConstraintEnergyContainer.hh [code]
file	ConstraintFactory.cc [code]
	Factory for creating various types of constraints.
file	ConstraintFactory.hh [code]
	Factory for creating various types of constraints.
file	ConstraintGraph.cc [code]
file	ConstraintGraph.fwd.hh [code]
	Constraints Energy Graph class forward declaration.
file	ConstraintGraph.hh [code]
file	ConstraintIO.cc [code]
file	ConstraintIO.hh [code]
file	Constraints.cc [code]
file	Constraints.fwd.hh [code]
file	Constraints.hh [code]
file	ConstraintsEnergy.cc [code]
file	ConstraintsEnergy.fwd.hh [code]
	Constraints Energy Method forward declaration.
file	ConstraintsEnergy.hh [code]
	Constraints Energy Method declaration.
file	ConstraintsEnergyCreator.hh [code]
	Declaration for the class that connects ConstraintsEnergy with the ScoringManager.
file	ConstraintSet.cc [code]
file	ConstraintSet.fwd.hh [code]
file	ConstraintSet.hh [code]
file	CoordinateConstraint.cc [code]
file	CoordinateConstraint.hh [code]
file	CstMinimizationData.cc [code]
	A cacheable data wrapper for ConstraintsOPs for use in minimization.
file	CstMinimizationData.hh [code]
	A cacheable data wrapper for ConstraintsOPs for use in minimization.
file	DihedralConstraint.cc [code]
file	DihedralConstraint.fwd.hh [code]
file	DihedralConstraint.hh [code]
file	DihedralPairConstraint.cc [code]
file	DihedralPairConstraint.hh [code]
file	DistancePairConstraint.cc [code]
file	DistancePairConstraint.hh [code]
file	DOF_Constraint.cc [code]
file	DOF_Constraint.fwd.hh [code]
file	DOF_Constraint.hh [code]
file	FabConstraint.cc [code]
	This class is specific to antibodies and penalizes presence of non-cdr residues.
file	FabConstraint.fwd.hh [code]
	This class is specific to antibodies and penalizes presence of residues flanking.
file	FabConstraint.hh [code]
	This class is specific to antibodies and penalizes presence of residues flanking antibody cdr residues at Antigen-Antibody interfaces (ported from Fab constraint in rosetta++ which uses a constant constraint score of 0.5/flanking residue)
file	KofNConstraint.cc [code]
	meta constraint where N constraints declared
file	KofNConstraint.fwd.hh [code]
	meta constraint where N constraints declared
file	KofNConstraint.hh [code]
	meta constraint where N constraints declared
file	LocalCoordinateConstraint.cc [code]
file	LocalCoordinateConstraint.hh [code]
file	MultiConstraint.cc [code]
	contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
file	MultiConstraint.fwd.hh [code]
file	MultiConstraint.hh [code]
	contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
file	NamedAngleConstraint.cc [code]
	Provides an angle constraint based on atom names, rather than numbers. Useful for when atom numbers change.
file	NamedAngleConstraint.fwd.hh [code]
	Provides an angle constraint based on atom names, rather than numbers. Useful for when atom numbers change.
file	NamedAngleConstraint.hh [code]
file	NamedAtomPairConstraint.cc [code]
file	NamedAtomPairConstraint.fwd.hh [code]
file	NamedAtomPairConstraint.hh [code]
file	NamedDihedralConstraint.cc [code]
	Provides a dihedral constraint based on atom names, rather than numbers. Useful for when atom numbers change.
file	NamedDihedralConstraint.fwd.hh [code]
	Provides a dihedral constraint based on atom names, rather than numbers. Useful for when atom numbers change.
file	NamedDihedralConstraint.hh [code]
file	NonResidueTypeConstraint.cc [code]
file	NonResidueTypeConstraint.fwd.hh [code]
file	NonResidueTypeConstraint.hh [code]
file	ResidueTypeConstraint.cc [code]
file	ResidueTypeConstraint.fwd.hh [code]
file	ResidueTypeConstraint.hh [code]
file	ResidueTypeLinkingConstraint.cc [code]
file	ResidueTypeLinkingConstraint.fwd.hh [code]
	constrainting two residues to be the same type, based on
file	ResidueTypeLinkingConstraint.hh [code]
file	SequenceProfileConstraint.cc [code]
	This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored.
file	SequenceProfileConstraint.fwd.hh [code]
file	SequenceProfileConstraint.hh [code]
	This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design).
file	SequenceProfileConstraintCreator.hh [code]
file	SiteConstraint.cc [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraint.fwd.hh [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraint.hh [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraintResidues.cc [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraintResidues.fwd.hh [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraintResidues.hh [code]
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	util.cc [code]
	utility functions for defining and using constraints.
file	util.hh [code]
	Utility functions for defining and using constraints.