rna Directory Reference

Directory dependency graph for rna:

Directories
directory	chemical_shift
directory	data

Files
file	RG_Energy_RNA.cc [code]
file	RG_Energy_RNA.hh [code]
file	RG_Energy_RNACreator.hh [code]
	Declaration for the class that connects RG_Energy_RNA with the ScoringManager.
file	RNA_AtomVDW.cc [code]
file	RNA_AtomVDW.fwd.hh [code]
file	RNA_AtomVDW.hh [code]
	Information on which atoms to use for computing clashes.
file	RNA_BulgeEnergy.cc [code]
file	RNA_BulgeEnergy.fwd.hh [code]
file	RNA_BulgeEnergy.hh [code]
	Score function class.
file	RNA_BulgeEnergyCreator.hh [code]
file	RNA_CentroidInfo.cc [code]
file	RNA_CentroidInfo.fwd.hh [code]
file	RNA_CentroidInfo.hh [code]
file	RNA_EnergyMethodOptions.cc [code]
file	RNA_EnergyMethodOptions.fwd.hh [code]
file	RNA_EnergyMethodOptions.hh [code]
file	RNA_FilteredBaseBaseInfo.cc [code]
file	RNA_FilteredBaseBaseInfo.fwd.hh [code]
file	RNA_FilteredBaseBaseInfo.hh [code]
file	RNA_FullAtomStackingEnergy.cc [code]
file	RNA_FullAtomStackingEnergy.fwd.hh [code]
file	RNA_FullAtomStackingEnergy.hh [code]
file	RNA_FullAtomStackingEnergyCreator.hh [code]
	Declaration for the class that connects RNA_FullAtomStackingEnergy with the ScoringManager.
file	RNA_FullAtomVDW_BasePhosphate.cc [code]
file	RNA_FullAtomVDW_BasePhosphate.fwd.hh [code]
file	RNA_FullAtomVDW_BasePhosphate.hh [code]
	FullAtom VDW energy between the base and phosphate group in the same (intra) nucleotide.
file	RNA_FullAtomVDW_BasePhosphateCreator.fwd.hh [code]
file	RNA_FullAtomVDW_BasePhosphateCreator.hh [code]
file	RNA_JR_SuiteEnergy.cc [code]
file	RNA_JR_SuiteEnergy.fwd.hh [code]
file	RNA_JR_SuiteEnergy.hh [code]
file	RNA_JR_SuiteEnergyCreator.hh [code]
file	RNA_LJ_BaseEnergy.cc [code]
file	RNA_LJ_BaseEnergy.fwd.hh [code]
file	RNA_LJ_BaseEnergy.hh [code]
	van der waals over aromatics
file	RNA_LJ_BaseEnergyCreator.hh [code]
	Declaration for the class that connects RNA_LJ_BaseEnergy with the ScoringManager.
file	RNA_LowResolutionPotential.cc [code]
file	RNA_LowResolutionPotential.fwd.hh [code]
file	RNA_LowResolutionPotential.hh [code]
file	RNA_PairwiseLowResolutionEnergy.cc [code]
	Statistically derived rotamer pair potential class implementation.
file	RNA_PairwiseLowResolutionEnergy.fwd.hh [code]
file	RNA_PairwiseLowResolutionEnergy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_PairwiseLowResolutionEnergyCreator.hh [code]
	Declaration for the class that connects RNA_PairwiseLowResolutionEnergy with the ScoringManager.
file	RNA_RawBaseBaseInfo.cc [code]
file	RNA_RawBaseBaseInfo.fwd.hh [code]
file	RNA_RawBaseBaseInfo.hh [code]
file	RNA_ScoringInfo.cc [code]
file	RNA_ScoringInfo.fwd.hh [code]
file	RNA_ScoringInfo.hh [code]
file	RNA_ScoringUtil.cc [code]
file	RNA_ScoringUtil.hh [code]
file	RNA_SugarCloseEnergy.cc [code]
file	RNA_SugarCloseEnergy.fwd.hh [code]
file	RNA_SugarCloseEnergy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_SugarCloseEnergyCreator.hh [code]
file	RNA_SuiteEnergy.cc [code]
file	RNA_SuiteEnergy.fwd.hh [code]
file	RNA_SuiteEnergy.hh [code]
file	RNA_SuiteEnergyCreator.hh [code]
	Declaration for the class that connects RNA_ChemicalMappingEnergy with the ScoringManager.
file	RNA_SuitePotential.cc [code]
file	RNA_SuitePotential.fwd.hh [code]
file	RNA_SuitePotential.hh [code]
file	RNA_TorsionEnergy.cc [code]
file	RNA_TorsionEnergy.fwd.hh [code]
file	RNA_TorsionEnergy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_TorsionEnergyCreator.hh [code]
	Declaration for the class that connects RNA_TorsionEnergy with the ScoringManager.
file	RNA_TorsionPotential.cc [code]
file	RNA_TorsionPotential.fwd.hh [code]
file	RNA_TorsionPotential.hh [code]
file	RNA_VDW_Energy.cc [code]
	Statistically derived clash check for RNA.
file	RNA_VDW_Energy.fwd.hh [code]
file	RNA_VDW_Energy.hh [code]
	Statistically derived rotamer pair potential class declaration.
file	RNA_VDW_EnergyCreator.hh [code]
	Declaration for the class that connects RNA_VDW_Energy with the ScoringManager.
file	StackElecEnergy.cc [code]
	FA_Elec, but just 'perpendicular' to bases... trying to separate from H-bonds & geom_sol.
file	StackElecEnergy.fwd.hh [code]
file	StackElecEnergy.hh [code]
file	StackElecEnergyCreator.hh [code]
	Declaration for the class that connects StackElecEnergy with the ScoringManager.