|
| file | AtomTreeDiffJobInputter.cc [code] |
| |
| file | AtomTreeDiffJobInputter.fwd.hh [code] |
| |
| file | AtomTreeDiffJobInputter.hh [code] |
| | header file for AtomTreeDiffJobInputter class
|
| |
| file | AtomTreeDiffJobInputterCreator.hh [code] |
| |
| file | AtomTreeDiffJobOutputter.cc [code] |
| | AtomTreeDiffJobOutputter.
|
| |
| file | AtomTreeDiffJobOutputter.fwd.hh [code] |
| | header file for AtomTreeDiffJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | AtomTreeDiffJobOutputter.hh [code] |
| | header file for AtomTreeDiffJobOutputter class
|
| |
| file | AtomTreeDiffJobOutputterCreator.hh [code] |
| |
| file | BatchJobInputter.cc [code] |
| |
| file | BatchJobInputter.fwd.hh [code] |
| |
| file | BatchJobInputter.hh [code] |
| | header file for BatchJobInputter class
|
| |
| file | BOINCJobDistributor.cc [code] |
| | implementation of BOINCJobDistributor
|
| |
| file | BOINCJobDistributor.hh [code] |
| | implementation of BOINCJobDistributor
|
| |
| file | FileJobOutputter.cc [code] |
| | August 2008 job distributor as planned at RosettaCon08 - FileJobOutputter.
|
| |
| file | FileJobOutputter.fwd.hh [code] |
| | header file for FileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | FileJobOutputter.hh [code] |
| | header file for FileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | FileSystemJobDistributor.cc [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Simplest class FileSystemJobDistributor.
|
| |
| file | FileSystemJobDistributor.fwd.hh [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Simplest class FileSystemJobDistributor.
|
| |
| file | FileSystemJobDistributor.hh [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Simplest class FileSystemJobDistributor.
|
| |
| file | InnerJob.cc [code] |
| |
| file | InnerJob.fwd.hh [code] |
| | header file for InnerJob class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | InnerJob.hh [code] |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08. This file is responsible for three ideas: "inner" jobs, "outer" jobs (with which the job distributor works) and job container (currently just typdefed in the .fwd.hh)
|
| |
| file | InnerMultiThreadingJob.cc [code] |
| |
| file | InnerMultiThreadingJob.fwd.hh [code] |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | InnerMultiThreadingJob.hh [code] |
| |
| file | JD2ResourceManager.cc [code] |
| |
| file | JD2ResourceManager.fwd.hh [code] |
| | Forward header for the JD2ResourceManager.
|
| |
| file | JD2ResourceManager.hh [code] |
| |
| file | JD2ResourceManagerCreator.hh [code] |
| |
| file | JD2ResourceManagerJobInputter.cc [code] |
| |
| file | JD2ResourceManagerJobInputter.hh [code] |
| |
| file | JD2ResourceManagerJobInputterCreator.hh [code] |
| |
| file | Job.cc [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Job classes.
|
| |
| file | Job.fwd.hh [code] |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | Job.hh [code] |
| | header file for ThreadingJob classes, part of August 2008 job distributor as planned at RosettaCon08. This file is responsible for three ideas: "inner" jobs, "outer" jobs (with which the job distributor works) and job container (currently just typdefed in the .fwd.hh)
|
| |
| file | JobDistributor.cc [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Base class.
|
| |
| file | JobDistributor.fwd.hh [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Base class.
|
| |
| file | JobDistributor.hh [code] |
| |
| file | JobDistributorFactory.cc [code] |
| |
| file | JobDistributorFactory.fwd.hh [code] |
| |
| file | JobDistributorFactory.hh [code] |
| |
| file | JobInputter.cc [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Interface base class JobInputter.
|
| |
| file | JobInputter.fwd.hh [code] |
| | header file for JobInputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | JobInputter.hh [code] |
| | header file for JobInputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | JobInputterCreator.cc [code] |
| |
| file | JobInputterCreator.hh [code] |
| | Base class for JobInputterCreators for the JobInputter load-time factory registration scheme.
|
| |
| file | JobInputterFactory.cc [code] |
| | JobInputterCreator base.
|
| |
| file | JobInputterFactory.fwd.hh [code] |
| | JobInputterFactory forward header.
|
| |
| file | JobInputterFactory.hh [code] |
| | JobInputterFactory.
|
| |
| file | JobOutputter.cc [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Base class JobOutputter.
|
| |
| file | JobOutputter.fwd.hh [code] |
| | header file for JobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | JobOutputter.hh [code] |
| | header file for JobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | JobOutputterCreator.cc [code] |
| |
| file | JobOutputterCreator.hh [code] |
| | Base class for JobOutputterCreators for the JobOutputter load-time factory registration scheme.
|
| |
| file | JobOutputterFactory.cc [code] |
| | JobOutputterCreator base.
|
| |
| file | JobOutputterFactory.fwd.hh [code] |
| | JobOutputterFactory forward header.
|
| |
| file | JobOutputterFactory.hh [code] |
| | JobOutputterFactory.
|
| |
| file | JobOutputterObserver.hh [code] |
| | classes that want to add score_value pairs to poses before they are output should derive from this Observer class
|
| |
| file | JobsContainer.cc [code] |
| | A container for an array of JobOPs.
|
| |
| file | JobsContainer.fwd.hh [code] |
| | header file for JobsContainer classes.
|
| |
| file | JobsContainer.hh [code] |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08. This file is responsible for three ideas: "inner" jobs, "outer" jobs (with which the job distributor works) and job container (currently just typdefed in the .fwd.hh)
|
| |
| file | LargeNstructJobInputter.cc [code] |
| | A JobInputter for cases where the number of jobs is large enough to fill up memory.
|
| |
| file | LargeNstructJobInputter.fwd.hh [code] |
| | Owning pointers and so forth for a JobInputter for cases where the number of jobs is large enough to fill up memory.
|
| |
| file | LargeNstructJobInputter.hh [code] |
| | Header file for a JobInputter for cases where the number of jobs is large enough to fill up memory.
|
| |
| file | LargeNstructJobInputterCreator.hh [code] |
| | Creator for a JobInputter for cases where the number of jobs is large enough to fill up memory.
|
| |
| file | LazySilentFileJobInputter.cc [code] |
| |
| file | LazySilentFileJobInputter.fwd.hh [code] |
| |
| file | LazySilentFileJobInputter.hh [code] |
| |
| file | LazySilentFileJobInputterCreator.hh [code] |
| |
| file | MpiFileBuffer.cc [code] |
| |
| file | MpiFileBuffer.fwd.hh [code] |
| |
| file | MpiFileBuffer.hh [code] |
| | header file for MPISilentFileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | MPIFileBufJobDistributor.cc [code] |
| | implementation of MPIFileBufJobDistributor
|
| |
| file | MPIFileBufJobDistributor.fwd.hh [code] |
| |
| file | MPIFileBufJobDistributor.hh [code] |
| |
| file | MPIMultiCommJobDistributor.cc [code] |
| | implementation of MPIMultiCommJobDistributor
|
| |
| file | MPIMultiCommJobDistributor.fwd.hh [code] |
| |
| file | MPIMultiCommJobDistributor.hh [code] |
| |
| file | MPIWorkPartitionJobDistributor.cc [code] |
| | implementation of MPIWorkPartitionJobDistributor - intended for MPI jobs on small numbers of nodes where the load can be balanced equally by the user
|
| |
| file | MPIWorkPartitionJobDistributor.fwd.hh [code] |
| | forward header for MPIWorkPartitonJobDistributor
|
| |
| file | MPIWorkPartitionJobDistributor.hh [code] |
| | header for MPIWorkPartitionJobDistributor - intended for MPI jobs on small numbers of nodes where the load can be balanced equally by the user
|
| |
| file | MPIWorkPoolJobDistributor.cc [code] |
| | implementation of MPIWorkPoolJobDistributor
|
| |
| file | MPIWorkPoolJobDistributor.fwd.hh [code] |
| | forward header for MPIWorkPoolJobDistributor
|
| |
| file | MPIWorkPoolJobDistributor.hh [code] |
| | header for MPIWorkPoolJobDistributor - intended for continuous resamplig jobs that spawn new jobs based on a pool/archive of structures
|
| |
| file | MSDJobDistributor.cc [code] |
| | Job distributor subclass for running restrained multistate design.
|
| |
| file | MSDJobDistributor.fwd.hh [code] |
| | Job distributor for running constrained multistate design.
|
| |
| file | MSDJobDistributor.hh [code] |
| |
| file | MultiThreadingJob.cc [code] |
| |
| file | MultiThreadingJob.fwd.hh [code] |
| | header file for Job classes, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | MultiThreadingJob.hh [code] |
| |
| file | NoOutputJobOutputter.hh [code] |
| | header file for NoOutputJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | NoOutputJobOutputterCreator.cc [code] |
| | NoOutputJobOutputCreator class, part of November 2011 XRW2.
|
| |
| file | NoOutputJobOutputterCreator.hh [code] |
| |
| file | Parser.cc [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Interface base class Parser.
|
| |
| file | Parser.fwd.hh [code] |
| | header file for Parser class, part of August 2008 job distributor
|
| |
| file | Parser.hh [code] |
| | header file for Parser class, part of August 2008 job distributor
|
| |
| file | PDBJobInputter.cc [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Base class PDBJobInputter.
|
| |
| file | PDBJobInputter.fwd.hh [code] |
| | header file for PDBJobInputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | PDBJobInputter.hh [code] |
| | header file for PDBJobInputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | PDBJobInputterCreator.hh [code] |
| |
| file | PDBJobOutputter.cc [code] |
| | August 2008 job distributor as planned at RosettaCon08 - PDBJobOutputter.
|
| |
| file | PDBJobOutputter.fwd.hh [code] |
| | header file for PDBJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | PDBJobOutputter.hh [code] |
| | header file for PDBJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | PDBJobOutputterCreator.hh [code] |
| |
| file | PoseInputStreamJobInputter.cc [code] |
| |
| file | PoseInputStreamJobInputter.fwd.hh [code] |
| |
| file | PoseInputStreamJobInputter.hh [code] |
| | header file for PoseInputStreamJobInputter class
|
| |
| file | PoseInputStreamJobInputterCreator.hh [code] |
| |
| file | ScoreMap.cc [code] |
| | A place to put some common functions for scoremap output.
|
| |
| file | ScoreMap.hh [code] |
| | A place to put some common functions for scoremap output.
|
| |
| file | ScoreOnlyJobOutputter.cc [code] |
| |
| file | ScoreOnlyJobOutputter.fwd.hh [code] |
| |
| file | ScoreOnlyJobOutputter.hh [code] |
| |
| file | ScoreOnlyJobOutputterCreator.hh [code] |
| |
| file | ScreeningJobInputter.cc [code] |
| | The ScreeningJobInputter The ScreeningJobInputter simplifies the process of inputting and handling input to a vHTS protocol. The ScreeningJobInputter takes in a JSON file using the -in:file:screening_job_file option This file is in the following format: { "jobs" : [ { "group_name" : "group_name_a", "proteins" : ["protein_a.pdb", "protein_b.pdb"], "ligands" : ["ligand_a.pdb", "ligand_b.pdb"] } ] "params : [ "aaa.param", "aab.param".
|
| |
| file | ScreeningJobInputter.fwd.hh [code] |
| | The ScreeningJobInputter forward headers.
|
| |
| file | ScreeningJobInputter.hh [code] |
| | The ScreeningJobInputter forward headers.
|
| |
| file | ScreeningJobInputterCreator.hh [code] |
| | Creator for ScreeningJobInputter.
|
| |
| file | ShuffleJobDistributor.cc [code] |
| |
| file | ShuffleJobDistributor.hh [code] |
| | implementation of ShuffleFileSystemJobDistributor
|
| |
| file | SilentFileJobInputter.cc [code] |
| |
| file | SilentFileJobInputter.fwd.hh [code] |
| |
| file | SilentFileJobInputter.hh [code] |
| | header file for SilentFileJobInputter class
|
| |
| file | SilentFileJobInputterCreator.hh [code] |
| |
| file | SilentFileJobOutputter.cc [code] |
| |
| file | SilentFileJobOutputter.fwd.hh [code] |
| | header file for SilentFileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | SilentFileJobOutputter.hh [code] |
| | header file for SilentFileJobOutputter class, part of August 2008 job distributor as planned at RosettaCon08
|
| |
| file | SilentFileJobOutputterCreator.hh [code] |
| |
| file | SingleFileBuffer.cc [code] |
| |
| file | SingleFileBuffer.fwd.hh [code] |
| |
| file | SingleFileBuffer.hh [code] |
| |
| file | util.cc [code] |
| |
| file | util.hh [code] |
| | August 2008 job distributor as planned at RosettaCon08 - Base class.
|
| |
1.8.7