app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo Class Reference

Public Member Functions
def	__init__
def	get_sequence
def	get_length
def	get_pdbID
def	get_pdbpath
def	get_region
def	get_start_residue
def	get_end_residue
def	get_chain
def	get_residue
def	set_sequence
def	set_pdbID
def	set_pdbpath
def	set_region

Public Attributes
	start
	sequence
	pdbID
	pdbpath
	region
	end
	chain

Detailed Description

Simple class for holding + accessing sequence metadata

Constructor & Destructor Documentation

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.__init__

(

self

)

Member Function Documentation

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_chain

(

self

)

References app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.chain.

Referenced by app.pyrosetta_toolkit.modules.Region.Region.get_region_string_with_all_residues().

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_end_residue

(

self

)

References basic::gpu::Timer.end, and app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.end.

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_length

(

self

)

References ObjexxFCL.len(), and app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.sequence.

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_pdbID

(

self

)

References app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.pdbID.

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_pdbpath

(

self

)

References app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.pdbpath.

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_region

(

self

)

References app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.region.

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_residue	(		self,
			resnum
	)

If region is given, resnum is residue number of PDB
If not, resnum in Rosetta resnum

References app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.sequence, and app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.start.

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_sequence

(

self

)

References app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.sequence.

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_start_residue

(

self

)

References app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.start.

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.set_pdbID	(		self,
			pdbID
	)

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.set_pdbpath	(		self,
			pdbpath
	)

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.set_region	(		self,
			region
	)

def app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.set_sequence	(		self,
			sequence
	)

Member Data Documentation

app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.chain

Referenced by app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow.__init__(), loadPDB.ProteinChain.copy(), app.pyrosetta_toolkit.modules.Region.Region.get_chain(), app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_chain(), app.pyrosetta_toolkit.modules.Region.Region.get_rosetta_end(), app.pyrosetta_toolkit.modules.Region.Region.get_rosetta_start(), app.pyrosetta_toolkit.modules.Region.Region.get_sequence(), loadPDB.ProteinChain.parse(), app.pyrosetta_toolkit.modules.Region.Region.region_exists(), loadPDB.PDBres.setChain(), and app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow.show_window().

app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.end

Referenced by app.pyrosetta_toolkit.modules.Region.Region.get_end(), app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_end_residue(), app.pyrosetta_toolkit.modules.Region.Region.get_region_type(), and app.pyrosetta_toolkit.modules.Region.Region.get_rosetta_end().

app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.pdbID

Referenced by app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.fetch_and_read_pdb_into_database(), app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_pdbID(), app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.read_pdb_into_database_flat(), and app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB.set_pdbID().

app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.pdbpath

Referenced by app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_pdbpath().

app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.region

Referenced by app.pyrosetta_toolkit.modules.Region.Region.__str__(), app.pyrosetta_toolkit.modules.Region.Region.get_region(), app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_region(), and app.pyrosetta_toolkit.modules.Region.Region.get_region_string().

app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.sequence

Referenced by loadPDB.ProteinChain.copy(), app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_length(), app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_residue(), app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_sequence(), and loadPDB.ProteinChain.parse().

app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.start

Referenced by app.pyrosetta_toolkit.modules.Region.Region.get_region_type(), app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_residue(), app.pyrosetta_toolkit.modules.Region.Region.get_rosetta_start(), app.pyrosetta_toolkit.modules.Region.Region.get_start(), and app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo.get_start_residue().

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The documentation for this class was generated from the following file:

• src/python/bindings/app/pyrosetta_toolkit/modules/DesignBreakdown.py