residue_selector Directory Reference

Directory dependency graph for residue_selector:

Files
file	AndResidueSelector.cc
	The AndResidueSelector combines logic from multiple ResidueSelectors.
file	AndResidueSelector.fwd.hh
	Forward declaration of a class that combines ResidueSelector logic.
file	AndResidueSelector.hh
	The AndResidueSelector combines logic from multiple ResidueSelectors.
file	BinSelector.cc
file	BinSelector.fwd.hh
	A ResidueSelector that selects residues based on their torsion bin (e.g. ABEGO bin).
file	BinSelector.hh
	A ResidueSelector that selects residues based on their torsion bin (e.g. ABEGO bin).
file	CachedResidueSubset.cc
	CacheableData wrapper for ResidueSubset storage.
file	CachedResidueSubset.fwd.hh
file	CachedResidueSubset.hh
file	ChainSelector.cc
	The ChainSelector combines logic from multiple ResidueSelectors.
file	ChainSelector.fwd.hh
	The ChainSelector selects all the residues from a given chain, given either as a number or a character.
file	ChainSelector.hh
	The ChainSelector selects all the residues from a given chain, given either as a number or a character. Clears the passed ResidueSubset.
file	InterGroupInterfaceByVectorSelector.cc
file	InterGroupInterfaceByVectorSelector.fwd.hh
file	InterGroupInterfaceByVectorSelector.hh
file	JumpDownstreamSelector.cc
file	JumpDownstreamSelector.fwd.hh
	Forward declaration of a class that selects residues downstream of a specified jump.
file	JumpDownstreamSelector.hh
	The JumpDownstreamSelector selects residues downstream of a given jump in a FoldTree.
file	JumpUpstreamSelector.cc
file	JumpUpstreamSelector.fwd.hh
	Forward declaration of a class that selects residues upstream of a specified jump.
file	JumpUpstreamSelector.hh
	The JumpUpstreamSelector selects residues downstream of a given jump in a FoldTree.
file	LayerSelector.cc
	A ResidueSelector for selecting residues based on layers defined by burial (core, boundary, surface, etc.).
file	LayerSelector.fwd.hh
	Forward definitions for a ResidueSelector for selecting residues based on layers defined by burial (core, boundary, surface, etc.).
file	LayerSelector.hh
	Header file for a ResidueSelector for selecting residues based on layers defined by burial (core, boundary, surface, etc.).
file	NeighborhoodResidueSelector.cc
file	NeighborhoodResidueSelector.fwd.hh
	Forward declaration of a class that selects residues from the neighborhood of a set of focus residues.
file	NeighborhoodResidueSelector.hh
	The NeighborhoodResidueSelector selects residues in a given proximity of set focus residues.
file	NotResidueSelector.cc
	The NotResidueSelector negates the logic of its loaded ResidueSelector.
file	NotResidueSelector.fwd.hh
file	NotResidueSelector.hh
	The NotResidueSelector negates the logic of its loaded ResidueSelector.
file	NumNeighborsSelector.cc
	The NumNeighborsSelector identifies all residues that have at least X neighbors within a distance D.
file	NumNeighborsSelector.fwd.hh
	Forward declaration of a class that identifies residues with at least X neighbors within a cutoff distance D.
file	NumNeighborsSelector.hh
	The NumNeighborsSelector identifies residues that have at least X neighbors within a distance Y. Clears the given ResidueSubset.
file	OrResidueSelector.cc
	The OrResidueSelector combines logic from multiple ResidueSelectors.
file	OrResidueSelector.fwd.hh
	Forward declaration of a class that negates ResidueSelector logic.
file	OrResidueSelector.hh
	The OrResidueSelector combines logic from multiple ResidueSelectors.
file	PhiSelector.cc
file	PhiSelector.fwd.hh
	A ResidueSelector that selects alpha-amino acids that are either in the positive phi or negative phi region of Ramachandran space (depending on user preferences).
file	PhiSelector.hh
	A ResidueSelector that selects alpha-amino acids that are either in the positive phi or negative phi region of Ramachandran space (depending on user preferences).
file	PrimarySequenceNeighborhoodSelector.cc
file	PrimarySequenceNeighborhoodSelector.fwd.hh
	Forward declaration of a class that selects residues using their names.
file	PrimarySequenceNeighborhoodSelector.hh
	The PrimarySequenceNeighborhoodSelector selects residues using a string containing residue names.
file	PrimarySequenceNeighborhoodSelectorCreator.hh
file	RandomResidueSelector.cc
file	RandomResidueSelector.fwd.hh
	Forward declaration of a class that selects residues at random.
file	RandomResidueSelector.hh
	The RandomResidueSelector selects residues using a string containing residue names.
file	ResidueIndexSelector.cc
file	ResidueIndexSelector.fwd.hh
	Forward declaration of a class that selects residues using a string containing pose indices.
file	ResidueIndexSelector.hh
	The ResidueIndexSelector selects residues using a string containing pose indices.
file	ResidueNameSelector.cc
file	ResidueNameSelector.fwd.hh
	Forward declaration of a class that selects residues using their names.
file	ResidueNameSelector.hh
	The ResidueNameSelector selects residues using a string containing residue names.
file	ResiduePDBInfoHasLabelSelector.cc
	The ResiduePDBInfoHasLabelSelector selects residues using a string containing residue names.
file	ResiduePDBInfoHasLabelSelector.fwd.hh
	Forward declaration of a class that selects residues using their names.
file	ResiduePDBInfoHasLabelSelector.hh
	The ResiduePDBInfoHasLabelSelector selects residues using a string containing residue names.
file	ResidueRanges.cc
	The ResidueRanges class identifies contiguous segments of a pose from a subset.
file	ResidueRanges.fwd.hh
	Forward declaration of a class that identifies continguous segments from a subset of residues from a Pose.
file	ResidueRanges.hh
	The ResidueRanges class identifies a subset of residues from a Pose.
file	ResidueSelector.cc
	The ResidueSelector class identifies a subset of residues from a Pose.
file	ResidueSelector.fwd.hh
	Forward declaration of a class that identifies a subset of residues from a Pose.
file	ResidueSelector.hh
	The ResidueSelector class identifies a subset of residues from a Pose.
file	ResidueSelectorCreator.fwd.hh
	Forward declaration of a class that instantiates a particular ResidueSelector.
file	ResidueSelectorCreator.hh
	Class for instantiating a particular ResidueSelector.
file	ResidueSelectorCreators.hh
	Class declarations for the ResidueSelectorCreators for a set of simple ResidueSelectors.
file	ResidueSelectorFactory.cc
	Implementation of the class for instantiating arbitrary ResidueSelectors from a string –> ResidueSelectorCreator map.
file	ResidueSelectorFactory.hh
	Class for instantiating arbitrary ResidueSelectors from a string –> ResidueSelectorCreator map.
file	ResidueSelectorRegistrator.hh
	Declaration of the template class for registrating ResidueSelectorCreators with the ResidueSelectorFactory.
file	ResidueVector.cc
	The ResidueVector class identifies contiguous segments of a pose from a subset.
file	ResidueVector.fwd.hh
	Forward declaration of a class that identifies continguous segments from a subset of residues from a Pose.
file	ResidueVector.hh
	The ResidueVector class identifies a subset of residues from a Pose.
file	SecondaryStructureSelector.cc
	The SecondaryStructureSelector selects residues based on secondary structure.
file	SecondaryStructureSelector.fwd.hh
	Forward declaration of a class to select residues based on their secondary structure.
file	SecondaryStructureSelector.hh
	The SecondaryStructureSelector selects residues based on their secondary structure.
file	TrueResidueSelector.cc
	The TrueResidueSelector creates an appropriate all-true vector.
file	TrueResidueSelector.fwd.hh
	Forward declaration of a class that combines ResidueSelector logic.
file	TrueResidueSelector.hh
	The TrueResidueSelector creates an appropriate all-true vector.
file	util.cc
	Utility functions for the residue selector classes, primarily, in constructing XML-Schema type definitions.
file	util.hh
	Utility functions for the residue selector classes, primarily, in constructing XML-Schema type definitions.