PhiPsi Namespace Reference

Classes
class	ATOMinfo

Functions
def	load
def	partner
def	coordinates
def	backbone
def	CA
def	hbond_record
def	vector
def	length
def	unit_vector
def	dot_product
def	cross_product
def	angle
def	scalar_triple_product
def	PhiPsi
def	SecondaryStructure
def	MAIN

Variables
list	pdb = argv[1]

Function Documentation

def PhiPsi.angle	(		vector1,
			vector2
	)

References dot_product(), length(), and unit_vector().

Referenced by PhiPsi().

def PhiPsi.backbone

(

pdb

)

Referenced by PhiPsi().

def PhiPsi.CA

(

pdb

)

Referenced by MAIN(), and SecondaryStructure().

def PhiPsi.coordinates

(

pdb

)

Referenced by PhiPsi().

def PhiPsi.cross_product	(		vector1,
			vector2
	)

Referenced by PhiPsi(), and scalar_triple_product().

def PhiPsi.dot_product	(		vector1,
			vector2
	)

Referenced by angle(), and scalar_triple_product().

def PhiPsi.hbond_record

(

pdb

)

References ObjexxFCL.len(), basic::options::OptionKeys::relax::range.range, and binder.split().

Referenced by SecondaryStructure().

def PhiPsi.length

(

vector

)

Referenced by angle().

def PhiPsi.load

(

file

)

References basic::database.open(), and ObjexxFCL.strip().

Referenced by MAIN(), PhiPsi(), and SecondaryStructure().

def PhiPsi.MAIN

(

pdb

)

References CA(), ObjexxFCL.len(), load(), basic::database.open(), partner(), basic::options::OptionKeys::relax::range.range, and SecondaryStructure().

def PhiPsi.partner

(

pdb

)

Referenced by MAIN(), PhiPsi(), and SecondaryStructure().

def PhiPsi.PhiPsi

(

pdb

)

References angle(), backbone(), coordinates(), cross_product(), ObjexxFCL.len(), load(), partner(), basic::options::OptionKeys::relax::range.range, scalar_triple_product(), and vector().

def PhiPsi.scalar_triple_product	(		vector1,
			vector2,
			vector3
	)

References cross_product(), and dot_product().

Referenced by PhiPsi().

def PhiPsi.SecondaryStructure

(

pdb

)

References ObjexxFCL.abs(), CA(), hbond_record(), ObjexxFCL.len(), load(), min(), partner(), and basic::options::OptionKeys::relax::range.range.

Referenced by MAIN().

def PhiPsi.unit_vector	(		vector,
			length
	)

Referenced by angle().

def PhiPsi.vector	(		pointA,
			pointB
	)

Referenced by PhiPsi().

Variable Documentation

list PhiPsi.pdb = argv[1]

Referenced by add_rosetta_options_0(), add_rosetta_options_1(), add_rosetta_options_10(), cs_rosetta_rna_pdb(), fill_optional_options(), main(), output_packstat(), output_packstat_pdb(), basic::options.process(), rna_fullatom_minimize_test(), and PDB_IOBenchmark.setUp().