fixbb.cc File Reference

Fixed backbone design. Can do side chain minimization after PackRotamers by using the flag -minimize_sidechains. This is SLOW. More...

#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/TaskFactory.hh>
#include <basic/options/option.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/simple_moves/MinPackMover.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <protocols/simple_moves/symmetry/SymPackRotamersMover.hh>
#include <protocols/simple_moves/MinMover.hh>
#include <protocols/simple_moves/symmetry/SymMinMover.hh>
#include <protocols/simple_moves/TaskAwareMinMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/simple_moves/symmetry/SetupForSymmetryMover.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <devel/init.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>

Namespaces
	basic
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
	basic::options
	basic::options::OptionKeys

Functions
int	main (int argc, char *argv[])

Variables
basic::options::BooleanOptionKey const	basic::options::OptionKeys::minimize_sidechains ("minimize_sidechains")
basic::options::BooleanOptionKey const	basic::options::OptionKeys::min_pack ("min_pack")
basic::options::BooleanOptionKey const	basic::options::OptionKeys::off_rotamer_pack ("off_rotamer_pack")

Detailed Description

Fixed backbone design. Can do side chain minimization after PackRotamers by using the flag -minimize_sidechains. This is SLOW.

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add(), utility::io::oc::cout, utility::options::ScalarOption_T_< K, T >::def(), pyrosetta::get_score_function, devel::init(), app.delta_score_per_mutation::min_mover, basic::options::OptionKeys::min_pack, basic::options::OptionKeys::run::min_type, basic::options::OptionKeys::minimize_sidechains, basic::options::OptionKeys::in::file::movemap, utility::excn::EXCN_Base::msg(), basic::options::OptionKeys::off_rotamer_pack, basic::options::option, options, test.Workshop6test::pack_mover, test.Workshop5test::seq_mover, basic::options::OptionKeys::symmetry::symmetry_definition, basic::options::OptionKeys::inout::dbms::user, and value.