validate_silent.cc File Reference

#include <iostream>
#include <string>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <devel/init.hh>
#include <utility/exit.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/vector1.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/sequence/util.hh>
#include <boost/algorithm/string/predicate.hpp>

Macros
#define	PCT_THRESHOLD   0.9

Functions
int	main (int argc, char *argv[])

Detailed Description

Author

Christopher Miles (cmile.nosp@m.s@uw.nosp@m..edu)

Macro Definition Documentation

#define PCT_THRESHOLD   0.9

Referenced by main().

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cerr, utility::io::oc::cout, in::file::fasta(), devel::init(), utility::excn::EXCN_Base::msg(), option, options, basic::options::OptionKeys::motifs::output_file, PCT_THRESHOLD, basic::options::OptionKeys::relax::sequence, in::file::silent(), basic::options::OptionKeys::in::file::silent, out::file::silent(), in::file::silent_read_through_errors(), basic::options::OptionKeys::in::file::tags, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.