farna Directory Reference

Directory dependency graph for farna:

Directories
directory	base_pairs
directory	fragments
directory	libraries
directory	movers
directory	options
directory	secstruct
directory	setup
directory	thermal_sampling

Files
file	ErraserMinimizerMover.cc
file	ErraserMinimizerMover.fwd.hh
file	ErraserMinimizerMover.hh
file	ErraserMinimizerMoverCreator.hh
	This class will create instances of Mover ErraserMinimizerMover for the MoverFactory.
file	FARNA_Optimizer.cc
file	FARNA_Optimizer.fwd.hh
file	FARNA_Optimizer.hh
file	RNA_DeNovoProtocol.cc
file	RNA_DeNovoProtocol.hh
file	RNA_FragmentMonteCarlo.cc
file	RNA_FragmentMonteCarlo.fwd.hh
file	RNA_FragmentMonteCarlo.hh
file	RNAIdealizeMover.cc
	Slowly accomodate movement from non-ideal to ideal bond lengths and angles by repeated minimization.
file	RNAIdealizeMover.fwd.hh
	Slowly accomodate movement from non-ideal to ideal bond lengths and angles by repeated minimization.
file	RNAIdealizeMover.hh
	Slowly accomodate movement from non-ideal to ideal bond lengths and angles by repeated minimization.
file	RNAIdealizeMoverCreator.hh
	Slowly accomodate movement from non-ideal to ideal bond lengths and angles by repeated minimization.
file	RNAThreadAndMinimizeMover.cc
	Thread a new sequence over a given RNA scaffold and do a little optimization.
file	RNAThreadAndMinimizeMover.fwd.hh
	Thread a new sequence over a given RNA scaffold and do a little optimization.
file	RNAThreadAndMinimizeMover.hh
	Thread a new sequence over a given RNA scaffold and do a little optimization.
file	RNAThreadAndMinimizeMoverCreator.hh
	Thread a new sequence over a given RNA scaffold and do a little optimization.
file	util.cc
file	util.hh