protocols::denovo_design::architects::DeNovoMotifArchitect Class Reference

for planning arbitrary motifs More...

#include <DeNovoArchitect.hh>

Inheritance diagram for protocols::denovo_design::architects::DeNovoMotifArchitect:

Public Types
typedef components::Segment	Motif
typedef components::SegmentOP	MotifOP
typedef components::SegmentCOP	MotifCOP
typedef utility::vector1 < MotifCOP >	MotifCOPs
Public Types inherited from protocols::denovo_design::architects::DeNovoArchitect
typedef components::StructureDataOP	StructureDataOP

Public Member Functions
	DeNovoMotifArchitect (std::string const &id)
virtual	~DeNovoMotifArchitect ()
virtual DeNovoArchitectOP	clone () const
virtual std::string	type () const
	simply returns the name of this type of architect More...
virtual components::StructureDataOP	design (core::pose::Pose const &pose, core::Real &random) const
MotifCOPs::const_iterator	motifs_begin () const
MotifCOPs::const_iterator	motifs_end () const
void	set_motifs (std::string const &motif_str)
void	set_motifs (MotifCOPs const &motifs)
Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
	DeNovoArchitect (std::string const &id)
virtual	~DeNovoArchitect ()
components::StructureDataOP	apply (core::pose::Pose const &pose) const
Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
	StructureArchitect (std::string const &id)
virtual	~StructureArchitect ()
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)
std::string const &	id () const
void	set_id (std::string const &new_id)

Static Public Member Functions
static std::string	architect_name ()

Protected Member Functions
virtual void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)
	Configuration by XML. More...

Private Attributes
MotifCOPs	motifs_

Additional Inherited Members
Static Public Attributes inherited from protocols::denovo_design::architects::DeNovoArchitect
static std::string const	DATA_MAP_NAME = "DeNovoArchitects"

Detailed Description

for planning arbitrary motifs

Member Typedef Documentation

typedef components::Segment protocols::denovo_design::architects::DeNovoMotifArchitect::Motif

typedef components::SegmentCOP protocols::denovo_design::architects::DeNovoMotifArchitect::MotifCOP

typedef utility::vector1< MotifCOP > protocols::denovo_design::architects::DeNovoMotifArchitect::MotifCOPs

typedef components::SegmentOP protocols::denovo_design::architects::DeNovoMotifArchitect::MotifOP

Constructor & Destructor Documentation

protocols::denovo_design::architects::DeNovoMotifArchitect::DeNovoMotifArchitect

(

std::string const &

id

)

Referenced by clone().

protocols::denovo_design::architects::DeNovoMotifArchitect::~DeNovoMotifArchitect ( )

virtual

Member Function Documentation

static std::string protocols::denovo_design::architects::DeNovoMotifArchitect::architect_name ( )

inlinestatic

Referenced by type().

DeNovoArchitectOP protocols::denovo_design::architects::DeNovoMotifArchitect::clone ( ) const

virtual

Implements protocols::denovo_design::architects::DeNovoArchitect.

References DeNovoMotifArchitect().

components::StructureDataOP protocols::denovo_design::architects::DeNovoMotifArchitect::design ( core::pose::Pose const &  pose, core::Real &  random  ) const

virtual

Implements protocols::denovo_design::architects::DeNovoArchitect.

References protocols::denovo_design::extract_int(), protocols::denovo_design::architects::StructureArchitect::id(), motifs_, protocols::TR(), and type().

DeNovoMotifArchitect::MotifCOPs::const_iterator protocols::denovo_design::architects::DeNovoMotifArchitect::motifs_begin

(

)

const

References motifs_.

DeNovoMotifArchitect::MotifCOPs::const_iterator protocols::denovo_design::architects::DeNovoMotifArchitect::motifs_end

(

)

const

References motifs_.

void protocols::denovo_design::architects::DeNovoMotifArchitect::parse_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data  )

protectedvirtual

Configuration by XML.

Implements protocols::denovo_design::architects::DeNovoArchitect.

References set_motifs().

void protocols::denovo_design::architects::DeNovoMotifArchitect::set_motifs

(

std::string const &

motif_str

)

Referenced by parse_tag().

void protocols::denovo_design::architects::DeNovoMotifArchitect::set_motifs

(

MotifCOPs const &

motifs

)

References motifs_.

std::string protocols::denovo_design::architects::DeNovoMotifArchitect::type ( ) const

virtual

simply returns the name of this type of architect

Implements protocols::denovo_design::architects::DeNovoArchitect.

References architect_name().

Referenced by design().

Member Data Documentation

MotifCOPs protocols::denovo_design::architects::DeNovoMotifArchitect::motifs_

private

Referenced by design(), motifs_begin(), motifs_end(), and set_motifs().

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/architects/DeNovoArchitect.hh
• src/protocols/denovo_design/architects/DeNovoArchitect.cc