|
| file | AddCavitiesMover.cc |
| |
| file | AddCavitiesMover.hh |
| |
| file | AddChainMover.cc |
| |
| file | AddChainMover.fwd.hh |
| | Add chain to an existing pose (as a new chain)
|
| |
| file | AddChainMover.hh |
| | switch the chain order
|
| |
| file | AddChainMoverCreator.hh |
| |
| file | AddConstraintsToCurrentConformationMover.cc |
| | Add constraints to the current pose conformation.
|
| |
| file | AddConstraintsToCurrentConformationMover.hh |
| | Add constraints to the current pose conformation.
|
| |
| file | AddConstraintsToCurrentConformationMoverCreator.hh |
| |
| file | AddJobPairData.cc |
| | A really simple mover that takes some data in through xml and appends it to the pose.
|
| |
| file | AddJobPairData.fwd.hh |
| | Forward Header file for the AddJobPairData Mover.
|
| |
| file | AddJobPairData.hh |
| | Header file for the AddJobPairData Mover.
|
| |
| file | AddJobPairDataCreator.hh |
| | MoverCreator definitions for the AddJobPairData mover.
|
| |
| file | AlignChainMover.cc |
| |
| file | AlignChainMover.fwd.hh |
| |
| file | AlignChainMover.hh |
| | switch the chain order
|
| |
| file | AlignChainMoverCreator.hh |
| |
| file | BackboneMover.cc |
| | Method definitions for SmallMover and ShearMover.
|
| |
| file | BackboneMover.fwd.hh |
| | BackboneMover forward declarations header.
|
| |
| file | BackboneMover.hh |
| | Declarations and simple accessor/mutator definitions for SmallMover and ShearMover.
|
| |
| file | BackboneMoverCreator.hh |
| | This class will create instances of protocols::moves::Movers SmallMover and ShearMover for the protocols::moves::MoverFactory.
|
| |
| file | BBConRotMover.cc |
| |
| file | BBConRotMover.fwd.hh |
| |
| file | BBConRotMover.hh |
| |
| file | BBDihedralSamplerMover.cc |
| |
| file | BBDihedralSamplerMover.fwd.hh |
| | Mover interface to BBDihedralSampler.
|
| |
| file | BBDihedralSamplerMover.hh |
| | Mover interface to BBDihedralSampler.
|
| |
| file | BBDihedralSamplerMoverCreator.hh |
| | Mover interface to BBDihedralSampler.
|
| |
| file | BBGaussianMover.cc |
| |
| file | BBGaussianMover.fwd.hh |
| | Gaussian Perturbation to backbone.
|
| |
| file | BBGaussianMover.hh |
| |
| file | BBGaussianMoverCreator.hh |
| |
| file | BoltzmannRotamerMover.cc |
| | implementation of BoltzmannRotamerMover class and functions
|
| |
| file | BoltzmannRotamerMover.fwd.hh |
| |
| file | BoltzmannRotamerMover.hh |
| | definition of BoltzmannRotamerMover class and functions
|
| |
| file | BoltzmannRotamerMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover BoltzmannRotamerMover for the protocols::moves::MoverFactory.
|
| |
| file | ChainSplitMover.cc |
| |
| file | ChainSplitMover.fwd.hh |
| | Forward declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
|
| |
| file | ChainSplitMover.hh |
| | Declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
|
| |
| file | ChangeAndResetFoldTreeMover.cc |
| |
| file | ChangeAndResetFoldTreeMover.fwd.hh |
| |
| file | ChangeAndResetFoldTreeMover.hh |
| | Basic Mover used for setting up atomic protocols.
|
| |
| file | ChangeAndResetFoldTreeMoverCreator.hh |
| |
| file | ClearConstraintsMover.cc |
| | Remove constraints from the current pose conformation.
|
| |
| file | ClearConstraintsMover.hh |
| | Add constraints to the current pose conformation.
|
| |
| file | ClearConstraintsMoverCreator.hh |
| |
| file | CombinePoseMover.cc |
| |
| file | CombinePoseMover.fwd.hh |
| |
| file | CombinePoseMover.hh |
| |
| file | ConsensusDesignMover.cc |
| | cc file for ConsensusDesignMover
|
| |
| file | ConsensusDesignMover.fwd.hh |
| | fwd.hh file for ConsensusDesignMover
|
| |
| file | ConsensusDesignMover.hh |
| | header file for ConsensusDesignMover
|
| |
| file | ConsensusDesignMoverCreator.hh |
| |
| file | ConstrainToIdealMover.cc |
| | Adds to your pose constraints suitable for idealization of bond lengths and angles.
|
| |
| file | ConstrainToIdealMover.fwd.hh |
| | ConstrainToIdealMover forward declarations header.
|
| |
| file | ConstrainToIdealMover.hh |
| | Adds to your pose constraints suitable for idealization of bond lengths and angles.
|
| |
| file | ConstraintSetMover.cc |
| | Assigns a ConstraintSet to a pose. Reads and creats ConstraintSet from file via command line option -constraints::cst_file, unless a ConstraintSet is supplied via the constructor or the constraint_set() method.
|
| |
| file | ConstraintSetMover.fwd.hh |
| |
| file | ConstraintSetMover.hh |
| | Assigns a ConstraintSet to a pose. Reads and creats ConstraintSet from file via command line option -constraints::cst_file, unless a ConstraintSet is supplied via the constructor or the constraint_set() method.
|
| |
| file | ConstraintSetMoverCreator.hh |
| |
| file | ContingentAcceptMover.cc |
| |
| file | ContingentAcceptMover.fwd.hh |
| | switch the chain order
|
| |
| file | ContingentAcceptMover.hh |
| | switch the chain order
|
| |
| file | ContingentAcceptMoverCreator.hh |
| |
| file | ConvertRealToVirtualMover.cc |
| | Mover for switching a residue type to all virtual.
|
| |
| file | ConvertRealToVirtualMover.fwd.hh |
| | Mover for switching a residue type to all virtual.
|
| |
| file | ConvertRealToVirtualMover.hh |
| | Mover for switching a residue type to all virtual.
|
| |
| file | ConvertRealToVirtualMoverCreator.hh |
| | Mover for switching a residue type to all virtual.
|
| |
| file | ConvertVirtualToRealMover.cc |
| | Mover for switching virtual residues back to real residues.
|
| |
| file | ConvertVirtualToRealMover.fwd.hh |
| | Mover for switching virtual residues back to real residues.
|
| |
| file | ConvertVirtualToRealMover.hh |
| | Mover for switching virtual residues back to real residues.
|
| |
| file | ConvertVirtualToRealMoverCreator.hh |
| |
| file | CopyDofMover.cc |
| |
| file | CopyDofMover.fwd.hh |
| |
| file | CopyDofMover.hh |
| |
| file | CopyRotamerMover.cc |
| | A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
|
| |
| file | CopyRotamerMover.fwd.hh |
| | A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
|
| |
| file | CopyRotamerMover.hh |
| | A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
|
| |
| file | CopyRotamerMoverCreator.hh |
| | A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
|
| |
| file | CoupledMover.cc |
| | implementation of CoupledMover class and functions
|
| |
| file | CoupledMover.fwd.hh |
| |
| file | CoupledMover.hh |
| | definition of CoupledMover class and functions
|
| |
| file | CoupledMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover CoupledMover for the protocols::moves::MoverFactory.
|
| |
| file | CstInfoMover.cc |
| | A Mover to output information about constraints.
|
| |
| file | CstInfoMover.fwd.hh |
| | A Mover to output information about constraints.
|
| |
| file | CstInfoMover.hh |
| | A Mover to output information about constraints.
|
| |
| file | CstInfoMoverCreator.hh |
| | A Mover to output information about constraints.
|
| |
| file | CutChainMover.cc |
| |
| file | CutChainMover.fwd.hh |
| |
| file | CutChainMover.hh |
| |
| file | CutChainMoverCreator.hh |
| |
| file | CyclizationMover.cc |
| |
| file | CyclizationMover.fwd.hh |
| |
| file | CyclizationMover.hh |
| | Implimentation file for CyclizationMover.
|
| |
| file | ddG.cc |
| | implementation of the ddG class for computing interface delta dGs
|
| |
| file | ddG.fwd.hh |
| | Forward declarations for ddG.
|
| |
| file | ddG.hh |
| |
| file | ddGCreator.hh |
| |
| file | DeleteChainMover.cc |
| |
| file | DeleteChainMover.fwd.hh |
| | Add chain to an existing pose (as a new chain)
|
| |
| file | DeleteChainMover.hh |
| | Delete the chain specified by chain number.
|
| |
| file | DeleteChainMoverCreator.hh |
| |
| file | DeleteChainsMover.cc |
| |
| file | DeleteChainsMover.fwd.hh |
| | Forward declations for DeleteChainsMover.
|
| |
| file | DeleteChainsMover.hh |
| | Delete a chain from a pose.
|
| |
| file | DeleteChainsMoverCreator.hh |
| | Declaration of the protocols::moves::MoverCreator class for the DeleteChainsMover.
|
| |
| file | DesignRepackMover.cc |
| |
| file | DesignRepackMover.fwd.hh |
| | Forward declations for DesignRepackMover.
|
| |
| file | DesignRepackMover.hh |
| |
| file | DisulfideInsertionMover.cc |
| | a mover that closes a receptor bound peptide by an added disulfide bond
|
| |
| file | DisulfideInsertionMover.fwd.hh |
| | Forward header file for DisulfideInsertionMover.
|
| |
| file | DisulfideInsertionMover.hh |
| | Header file for DisulfideInsertionMover.
|
| |
| file | DisulfideInsertionMoverCreator.cc |
| | Creator class for DisulfideInsertionMover.
|
| |
| file | DisulfideInsertionMoverCreator.fwd.hh |
| | Creator class for DisulfideInsertionMover.
|
| |
| file | DisulfideInsertionMoverCreator.hh |
| | Creator class for DisulfideInsertionMover.
|
| |
| file | DME_FilterMover.cc |
| |
| file | DME_FilterMover.hh |
| |
| file | DOFHistogramRecorder.cc |
| |
| file | DOFHistogramRecorder.fwd.hh |
| | Forward declarations for class DOFHistogramRecorder.
|
| |
| file | DOFHistogramRecorder.hh |
| |
| file | DumpPdb.cc |
| |
| file | DumpPdb.fwd.hh |
| | Forward header file for DumpPdb.
|
| |
| file | DumpPdb.hh |
| |
| file | DumpPdbCreator.hh |
| |
| file | DumpSingleResidueRotamers.cc |
| | Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
|
| |
| file | DumpSingleResidueRotamers.fwd.hh |
| | Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
|
| |
| file | DumpSingleResidueRotamers.hh |
| | Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
|
| |
| file | DumpSingleResidueRotamersCreator.hh |
| | Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
|
| |
| file | EvolutionaryDynamicsMover.cc |
| |
| file | EvolutionaryDynamicsMover.fwd.hh |
| |
| file | EvolutionaryDynamicsMover.hh |
| | perform a given mover and sample structures by MonteCarlo
|
| |
| file | EvolutionaryDynamicsMoverCreator.hh |
| |
| file | ExtendedPoseMover.cc |
| |
| file | ExtendedPoseMover.fwd.hh |
| |
| file | ExtendedPoseMover.hh |
| |
| file | ExtendedPoseMoverCreator.cc |
| |
| file | ExtendedPoseMoverCreator.hh |
| |
| file | FavorSequenceProfile.cc |
| | Add a SequenceProfileConstraint to a pose.
|
| |
| file | FavorSequenceProfile.hh |
| | Add a SequenceProfileConstraint to a pose.
|
| |
| file | FavorSequenceProfileCreator.hh |
| | Declaration of the protocols::moves::MoverCreator class for the FavorSequenceProfile.
|
| |
| file | FavorSymmetricSequence.cc |
| | apply constraints to enforce a symmetric sequence
|
| |
| file | FavorSymmetricSequence.fwd.hh |
| | apply constraints to enforce a symmetric sequence
|
| |
| file | FavorSymmetricSequence.hh |
| | apply constraints to enforce a symmetric sequence
|
| |
| file | FavorSymmetricSequenceCreator.hh |
| | apply constraints to enforce a symmetric sequence
|
| |
| file | FindConsensusSequence.cc |
| | Takes in multiple poses from the MSDJobDistributor and finds the consensus sequence that optimizes energy of all input poses.
|
| |
| file | FindConsensusSequence.fwd.hh |
| | Finds the consensus sequence that optimizes energy of all input poses.
|
| |
| file | FindConsensusSequence.hh |
| | Takes in multiple poses from the MSDJobDistributor and finds the consensus sequence that optimizes energy of all input poses.
|
| |
| file | FindConsensusSequenceCreator.hh |
| | Multistate design mover used for constrained MSD application.
|
| |
| file | ForceDisulfidesMover.cc |
| |
| file | ForceDisulfidesMover.fwd.hh |
| | ForceDisulfidesMover forward declarations header.
|
| |
| file | ForceDisulfidesMover.hh |
| |
| file | ForceDisulfidesMoverCreator.hh |
| |
| file | FragmentMover.cc |
| |
| file | FragmentMover.fwd.hh |
| |
| file | FragmentMover.hh |
| |
| file | GenericMonteCarloMover.cc |
| |
| file | GenericMonteCarloMover.fwd.hh |
| |
| file | GenericMonteCarloMover.hh |
| | perform a given mover and sample structures by MonteCarlo
|
| |
| file | GenericMonteCarloMoverCreator.hh |
| |
| file | GenericSimulatedAnnealer.cc |
| | perform a given mover and sample structures by MonteCarlo with gradual simulated annealing
|
| |
| file | GenericSimulatedAnnealer.fwd.hh |
| |
| file | GenericSimulatedAnnealer.hh |
| | perform a given mover and sample structures by MonteCarlo with simulated annealing of acceptance temperatures
|
| |
| file | GenericSimulatedAnnealerCreator.hh |
| | This class will create instances of Mover GenericSimulatedAnnealer for the MoverFactory.
|
| |
| file | GreenPacker.cc |
| | packing mover that makes extensive reuse of rotamer pair energies class definition
|
| |
| file | GreenPacker.fwd.hh |
| | packing mover that makes extensive reuse of rotamer pair energies class forward declaration
|
| |
| file | GreenPacker.hh |
| | packing mover that makes extensive reuse of rotamer pair energies class declaration
|
| |
| file | GunnCost.cc |
| |
| file | GunnCost.hh |
| |
| file | LoadPDBMover.cc |
| | simple mover that loads a pdb from file and replaces the current pdb with it. Useful for checkpointing
|
| |
| file | LoadPDBMover.fwd.hh |
| | switch the chain order
|
| |
| file | LoadPDBMover.hh |
| | switch the chain order
|
| |
| file | LoadPDBMoverCreator.hh |
| |
| file | LoadUnboundRotMover.cc |
| | LoadUnboundRotMover methods implemented.
|
| |
| file | LoadUnboundRotMover.fwd.hh |
| |
| file | LoadUnboundRotMover.hh |
| |
| file | LoadUnboundRotMoverCreator.hh |
| |
| file | MakePolyXMover.cc |
| | convert pose to poly XXX: any amino acid, default poly Ala
|
| |
| file | MakePolyXMover.fwd.hh |
| | convert pose to poly XXX: any amino acid, default poly Ala
|
| |
| file | MakePolyXMover.hh |
| | header file of MakePolyXMover.cc
|
| |
| file | MakePolyXMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover MakePolyXMover for the protocols::moves::MoverFactory.
|
| |
| file | MembraneTopology.cc |
| |
| file | MembraneTopology.fwd.hh |
| |
| file | MembraneTopology.hh |
| |
| file | MembraneTopologyCreator.hh |
| |
| file | MergePDBMover.cc |
| | This class will allign & combine parts of the pdb.
|
| |
| file | MergePDBMover.fwd.hh |
| |
| file | MergePDBMover.hh |
| | This class will allign & combine parts of the pdb.
|
| |
| file | MergePDBMoverCreator.hh |
| | This class will allign & combine parts of the pdb.
|
| |
| file | MinMover.cc |
| | method definitions for MinMover
|
| |
| file | MinMover.fwd.hh |
| | MinMover forward declarations header.
|
| |
| file | MinMover.hh |
| | class definition for MinMover
|
| |
| file | MinMoverCreator.hh |
| |
| file | MinPackMover.cc |
| | Implementation of the MinPackMover class; a wrapper class for invoking core::pack::min_pack.
|
| |
| file | MinPackMover.fwd.hh |
| | Forward declaration of the mover class to both pack and minimize rotamers.
|
| |
| file | MinPackMover.hh |
| | protocols::moves::Mover class to invoke core::pack::min_pack
|
| |
| file | MinPackMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover MinPackMover for the protocols::moves::MoverFactory.
|
| |
| file | MissingDensityToJumpMover.cc |
| | Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
|
| |
| file | MissingDensityToJumpMover.fwd.hh |
| | Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
|
| |
| file | MissingDensityToJumpMover.hh |
| |
| file | ModifyVariantTypeMover.cc |
| | Modify variant type to residues.
|
| |
| file | ModifyVariantTypeMover.fwd.hh |
| |
| file | ModifyVariantTypeMover.hh |
| |
| file | ModifyVariantTypeMoverCreator.hh |
| |
| file | MonteCarloRecover.cc |
| |
| file | MonteCarloRecover.fwd.hh |
| |
| file | MonteCarloRecover.hh |
| |
| file | MonteCarloRecoverCreator.hh |
| |
| file | MonteCarloReset.cc |
| |
| file | MonteCarloReset.fwd.hh |
| |
| file | MonteCarloReset.hh |
| | perform a given mover and sample structures by MonteCarlo
|
| |
| file | MonteCarloResetCreator.hh |
| |
| file | MonteCarloTest.cc |
| |
| file | MonteCarloTest.fwd.hh |
| |
| file | MonteCarloTest.hh |
| | perform a given mover and sample structures by MonteCarlo
|
| |
| file | MonteCarloTestCreator.hh |
| |
| file | MSDMover.cc |
| | Multistate design mover used for restrained multistate design.
|
| |
| file | MSDMover.fwd.hh |
| | Multistate design mover used for constrained MSD application.
|
| |
| file | MSDMover.hh |
| | Multistate design mover used for restrained multistate design.
|
| |
| file | MSDMoverCreator.hh |
| | Multistate design mover used for constrained MSD application.
|
| |
| file | MutateResidue.cc |
| |
| file | MutateResidue.fwd.hh |
| |
| file | MutateResidue.hh |
| |
| file | MutateResidueCreator.hh |
| |
| file | PackRotamersMover.cc |
| |
| file | PackRotamersMover.fwd.hh |
| |
| file | PackRotamersMover.hh |
| |
| file | PackRotamersMoverCreator.hh |
| |
| file | PackRotamersMoverLazy.cc |
| |
| file | PackRotamersMoverLazy.fwd.hh |
| |
| file | PackRotamersMoverLazy.hh |
| |
| file | PackRotamersMoverLazyCreator.hh |
| |
| file | PDBReloadMover.cc |
| |
| file | PDBReloadMover.fwd.hh |
| | PDBReloadMover forward declarations header.
|
| |
| file | PDBReloadMover.hh |
| |
| file | PDBReloadMoverCreator.hh |
| |
| file | PeptideStapleMover.cc |
| | Peptide Staples are covalent links between i/i+[4,7] residues in a helix. Applying a PeptideStapleMover creates one of these links.
|
| |
| file | PeptideStapleMover.fwd.hh |
| |
| file | PeptideStapleMover.hh |
| | Definition of classes for placing peptide staples in the pose.
|
| |
| file | PeriodicBoxMover.cc |
| | Mover for running liquid simulation (or related other)
|
| |
| file | PeriodicBoxMover.fwd.hh |
| |
| file | PeriodicBoxMover.hh |
| | Mover for running liquid simulation (and related others)
|
| |
| file | PeriodicBoxMoverCreator.hh |
| |
| file | PertMinMover.cc |
| | Roberto Chica inspired random perturbation followed by minimization.
|
| |
| file | PertMinMover.fwd.hh |
| | Random perturbation, followed by minimization.
|
| |
| file | PertMinMover.hh |
| | Roberto Chica inspired random perturbation followed by minimization.
|
| |
| file | PertMinMoverCreator.hh |
| | Random perturbation, followed by minimization.
|
| |
| file | ProlineFixMover.cc |
| |
| file | ProlineFixMover.fwd.hh |
| |
| file | ProlineFixMover.hh |
| |
| file | PSSM2BfactorMover.cc |
| |
| file | PSSM2BfactorMover.fwd.hh |
| | switch the chain order
|
| |
| file | PSSM2BfactorMover.hh |
| |
| file | PSSM2BfactorMoverCreator.hh |
| |
| file | RandomOmegaFlipMover.cc |
| |
| file | RandomOmegaFlipMover.fwd.hh |
| |
| file | RandomOmegaFlipMover.hh |
| |
| file | RandomOmegaFlipMoverCreator.hh |
| | This class will create instances of RandomOmegaFlipMover for the MoverFactory.
|
| |
| file | RandomTorsionMover.cc |
| |
| file | RandomTorsionMover.fwd.hh |
| |
| file | RandomTorsionMover.hh |
| |
| file | RandomTorsionMoverCreator.hh |
| | This class will create instances of RandomTorsionMover for the MoverFactory.
|
| |
| file | RepackSidechainsMover.cc |
| |
| file | RepackSidechainsMover.fwd.hh |
| |
| file | RepackSidechainsMover.hh |
| |
| file | RepackSidechainsMoverCreator.hh |
| |
| file | RepeatPropagationMover.cc |
| | Can repeat both a symmetric, non symmetric & broken pose.
|
| |
| file | RepeatPropagationMover.fwd.hh |
| |
| file | RepeatPropagationMover.hh |
| |
| file | RepeatPropagationMoverCreator.hh |
| |
| file | ReportEffectivePKA.cc |
| |
| file | ReportEffectivePKA.hh |
| |
| file | ReportEffectivePKACreator.hh |
| | This class will create instances of Mover ReportEffectivePKA for the MoverFactory.
|
| |
| file | RepulsiveOnlyMover.cc |
| | calculate repulsive energy only for certain residues
|
| |
| file | RepulsiveOnlyMover.fwd.hh |
| |
| file | RepulsiveOnlyMover.hh |
| |
| file | ResetBaselineMover.cc |
| |
| file | ResetBaselineMover.fwd.hh |
| | switch the chain order
|
| |
| file | ResetBaselineMover.hh |
| | switch the chain order
|
| |
| file | ResetBaselineMoverCreator.hh |
| |
| file | ResetFoldTree.cc |
| |
| file | ResetFoldTree.fwd.hh |
| | eliminates the fold tree
|
| |
| file | ResetFoldTree.hh |
| | wipes out a fold tree making the first residue 0 and the last residue the length of the protein
|
| |
| file | ResetFoldTreeCreator.hh |
| |
| file | ResidueTypeConstraintMover.cc |
| | Assigns a ResidueTypeConstraint to a pose.
|
| |
| file | ResidueTypeConstraintMover.fwd.hh |
| |
| file | ResidueTypeConstraintMover.hh |
| | Assigns a ResidueTypeConstraint to a pose.
|
| |
| file | ResidueTypeConstraintMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover ResidueTypeConstraintMover for the protocols::moves::MoverFactory.
|
| |
| file | ResTypeFragmentMover.cc |
| |
| file | ResTypeFragmentMover.fwd.hh |
| |
| file | ResTypeFragmentMover.hh |
| |
| file | ReturnSidechainMover.cc |
| | ReturnSidechainMover methods implemented.
|
| |
| file | ReturnSidechainMover.fwd.hh |
| | ReturnSidechainMover forward declarations header.
|
| |
| file | ReturnSidechainMover.hh |
| | protocols::moves::Mover to "return" proper sidechains to a pose that was temporarily in centroid mode (can be used for any sidechain copying)
|
| |
| file | RingConformationMover.cc |
| | Method definitions for RingConformationMover.
|
| |
| file | RingConformationMover.fwd.hh |
| | Forward declarations for RingConformationMover.
|
| |
| file | RingConformationMover.hh |
| | Declarations and simple accessor/mutator definitions for RingConformationMover.
|
| |
| file | RingConformationMoverCreator.hh |
| | Method declarations for RingConformationMoverCreator.
|
| |
| file | RotamerizeMover.cc |
| | Definitions of class methods for RotamerizeMover.
|
| |
| file | RotamerizeMover.fwd.hh |
| | forward declarations for rotamerizing
|
| |
| file | RotamerizeMover.hh |
| |
| file | RotamerTrialsMinMover.cc |
| | protocols::moves::Mover for Rotamer-Trials with Minimization (based on RotamerTrialsMover)
|
| |
| file | RotamerTrialsMinMover.fwd.hh |
| |
| file | RotamerTrialsMinMover.hh |
| | Wrapper mover for Rotamer-Trials with Minimization (based on RotamerTrialsMover)
|
| |
| file | RotamerTrialsMinMoverCreator.hh |
| | This class will create instances of RotamerTrialsMinMover for the protocols::moves::MoverFactory.
|
| |
| file | RotamerTrialsMover.cc |
| |
| file | RotamerTrialsMover.fwd.hh |
| |
| file | RotamerTrialsMover.hh |
| |
| file | RotamerTrialsMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover SidechainMCMover for the protocols::moves::MoverFactory.
|
| |
| file | SaneMinMover.cc |
| |
| file | SaneMinMover.fwd.hh |
| |
| file | SaneMinMover.hh |
| |
| file | SaneMinMoverCreator.hh |
| |
| file | ScoreMover.cc |
| | Applies a ScoreFunction to a Pose. Also has CASP and loop modeling features.
|
| |
| file | ScoreMover.fwd.hh |
| | ScoreMover forward declarations header.
|
| |
| file | ScoreMover.hh |
| |
| file | ScoreMoverCreator.hh |
| |
| file | SequenceProfileMover.cc |
| | moverization of code that was embedded in the parser
|
| |
| file | SequenceProfileMover.fwd.hh |
| |
| file | SequenceProfileMover.hh |
| | BS mover to get around a stupid "mover" that was embedded in the parser.
|
| |
| file | SequenceProfileMoverCreator.hh |
| |
| file | SetReturningPackRotamersMover.cc |
| | A pack mover which returns not just the best packer solution, but all nloop solutions.
|
| |
| file | SetReturningPackRotamersMover.fwd.hh |
| |
| file | SetReturningPackRotamersMover.hh |
| | A PackRotamers mover which returns a set of packed poses for when ndruns/nloop is in use.
|
| |
| file | SetTorsion.cc |
| |
| file | SetTorsion.fwd.hh |
| |
| file | SetTorsion.hh |
| | Sets the value of a desired torsion. Header files for the mover.
|
| |
| file | SetTorsionCreator.hh |
| |
| file | SetupMetalsMover.cc |
| |
| file | SetupMetalsMover.fwd.hh |
| | SetupMetalsMover forward declarations header.
|
| |
| file | SetupMetalsMover.hh |
| | class definition for SetupMetalsMover
|
| |
| file | SetupMetalsMoverCreator.hh |
| |
| file | ShakeStructureMover.cc |
| |
| file | ShakeStructureMover.fwd.hh |
| |
| file | ShakeStructureMover.hh |
| |
| file | ShortBackrubMover.cc |
| | implementation of ShortBackrubMover class and functions
|
| |
| file | ShortBackrubMover.fwd.hh |
| |
| file | ShortBackrubMover.hh |
| | definition of ShortBackrubMover class and functions
|
| |
| file | ShortBackrubMoverCreator.hh |
| | This class will create instances of protocols::moves::Mover ShortBackrubMover for the protocols::moves::MoverFactory.
|
| |
| file | SimpleThreadingMover.cc |
| | Very Simple class for threading a regional sequence onto a structure.
|
| |
| file | SimpleThreadingMover.fwd.hh |
| |
| file | SimpleThreadingMover.hh |
| |
| file | SimpleThreadingMoverCreator.hh |
| |
| file | SmoothFragmentMover.cc |
| |
| file | SmoothFragmentMover.fwd.hh |
| |
| file | SmoothFragmentMover.hh |
| |
| file | StorePoseSnapshot.cc |
| | Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state.
|
| |
| file | StorePoseSnapshot.fwd.hh |
| | Owning pointers and whatnot for the StorePoseSnapshot mover class.
|
| |
| file | StorePoseSnapshot.hh |
| | Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state. Header files for the mover.
|
| |
| file | StorePoseSnapshotCreator.hh |
| | This class will create instances of the protocols::simple_moves::StorePoseSnapshot mover for the protocols::moves::MoverFactory.
|
| |
| file | StructProfileMover.cc |
| |
| file | StructProfileMover.fwd.hh |
| | Quickly generates a structure profile.
|
| |
| file | StructProfileMover.hh |
| | Quickly generates a structure profile.
|
| |
| file | StructProfileMoverCreator.hh |
| |
| file | SuperimposeMover.cc |
| |
| file | SuperimposeMover.fwd.hh |
| | SuperimposeMover forward declarations header.
|
| |
| file | SuperimposeMover.hh |
| |
| file | SuperimposeMoverCreator.hh |
| |
| file | SwitchChainOrderMover.cc |
| |
| file | SwitchChainOrderMover.fwd.hh |
| | switch the chain order
|
| |
| file | SwitchChainOrderMover.hh |
| | switch the chain order
|
| |
| file | SwitchChainOrderMoverCreator.hh |
| |
| file | SwitchResidueTypeSetMover.cc |
| | switch between residue type sets (e.g. centroid and all atom)
|
| |
| file | SwitchResidueTypeSetMover.fwd.hh |
| | switch between residue type sets (e.g. centroid and all atom)
|
| |
| file | SwitchResidueTypeSetMover.hh |
| | switch between residue type sets (e.g. centroid and all atom)
|
| |
| file | SwitchResidueTypeSetMoverCreator.hh |
| |
| file | SymmetricFragmentMover.cc |
| |
| file | SymmetricFragmentMover.fwd.hh |
| |
| file | SymmetricFragmentMover.hh |
| |
| file | TailsScoreMover.cc |
| |
| file | TailsScoreMover.hh |
| |
| file | TaskAwareMinMover.cc |
| | TaskAwareMinMover methods implemented.
|
| |
| file | TaskAwareMinMover.fwd.hh |
| | TaskAwareMinMover forward declarations header.
|
| |
| file | TaskAwareMinMover.hh |
| | MinMover which updates MoveMap to mirror PackerTask.
|
| |
| file | TaskAwareMinMoverCreator.hh |
| |
| file | TorsionDOFMover.cc |
| | TorsionDOFMover methods implemented.
|
| |
| file | TorsionDOFMover.fwd.hh |
| | TorsionDOFMover forward declarations header.
|
| |
| file | TorsionDOFMover.hh |
| | TorsionDOFMover header.
|
| |
| file | TorsionSetMover.cc |
| |
| file | TorsionSetMover.fwd.hh |
| |
| file | TorsionSetMover.hh |
| |
| file | Tumble.cc |
| | Add constraints to the current pose conformation.
|
| |
| file | Tumble.hh |
| | Declaration of the MoverCreator class for the Tumble.
|
| |
| file | TumbleCreator.hh |
| |
| file | UniformPositionMover.cc |
| |
| file | UniformPositionMover.fwd.hh |
| | Apply a uniform (deterministic move) to a given position.
|
| |
| file | UniformPositionMover.hh |
| | Apply a uniform (deterministic move) to a given position.
|
| |
| file | VirtualRootMover.cc |
| | Manipulate virtual roots on poses. This is a seperate mover mainly to be RosettaScriptable.
|
| |
| file | VirtualRootMover.fwd.hh |
| | VirtualRootMover forward declarations header.
|
| |
| file | VirtualRootMover.hh |
| | Manipulate virtual roots on poses.
|
| |
| file | VirtualRootMoverCreator.hh |
| |
| file | WobbleMover.cc |
| |
| file | WobbleMover.hh |
| |
1.8.7