- b -

• BackboneGridSamplerCOP : protocols::helical_bundle
• BackboneGridSamplerCOPs : protocols::helical_bundle
• BackboneGridSamplerHelperAP : protocols::helical_bundle
• BackboneGridSamplerHelperCAP : protocols::helical_bundle
• BackboneGridSamplerHelperCAPs : protocols::helical_bundle
• BackboneGridSamplerHelperCOP : protocols::helical_bundle
• BackboneGridSamplerHelperCOPs : protocols::helical_bundle
• BackboneGridSamplerHelperOP : protocols::helical_bundle
• BackboneGridSamplerHelperOPs : protocols::helical_bundle
• BackboneGridSamplerOP : protocols::helical_bundle
• BackboneGridSamplerOPs : protocols::helical_bundle
• BackboneIndexMap : protocols::loophash
• BackboneMoverCOP : protocols::simple_moves
• BackboneMoverOP : protocols::simple_moves
• BackboneStubConstraintCOP : core::scoring::constraints
• BackboneStubConstraintCOPs : core::scoring::constraints
• BackboneStubConstraintOP : core::scoring::constraints
• BackboneStubConstraintOPs : core::scoring::constraints
• BackboneStubLinearConstraintCOP : core::scoring::constraints
• BackboneStubLinearConstraintCOPs : core::scoring::constraints
• BackboneStubLinearConstraintOP : core::scoring::constraints
• BackboneStubLinearConstraintOPs : core::scoring::constraints
• BackrubMoverCOP : protocols::backrub
• BackrubMoverOP : protocols::backrub
• BackrubProtocolCOP : protocols::backrub
• BackrubProtocolOP : protocols::backrub
• BackrubSidechainMoverCOP : protocols::backrub
• BackrubSidechainMoverOP : protocols::backrub
• BalancedKicMoverCOP : protocols::kinematic_closure
• BalancedKicMoverOP : protocols::kinematic_closure
• BaseArchiveManagerAP : protocols::jd2::archive
• BaseBinMap : protocols::stepwise::modeler::rna::rigid_body
• BaseBinMapUpdaterCOP : protocols::stepwise::screener
• BaseBinMapUpdaterOP : protocols::stepwise::screener
• BaseCacheUnitAP : core::fragment
• BaseCacheUnitOP : core::fragment
• BaseCentroidScreenerCOP : protocols::stepwise::screener
• BaseCentroidScreenerOP : protocols::stepwise::screener
• BaseJobDistributorOP : protocols::jobdist
• BaseJumpSetupCOP : protocols::jumping
• BaseJumpSetupOP : protocols::jumping
• BasePairConstraintCOP : core::scoring::constraints
• BasePairConstraintOP : core::scoring::constraints
• BasePairCOP : core::pose::rna
• BasePairingLibraryCOP : protocols::jumping
• BasePairingLibraryOP : protocols::jumping
• BasePairOP : core::pose::rna
• BasePairStepCOP : protocols::rna::denovo::base_pairs
• BasePairStepLibraryCOP : protocols::rna::denovo::libraries
• BasePairStepLibraryOP : protocols::rna::denovo::libraries
• BasePairStepOP : protocols::rna::denovo::base_pairs
• BasePartnerOP : core::scoring::dna
• BaseStackCOP : core::pose::rna
• BaseStackOP : core::pose::rna
• BasicCDRClusterSetCOP : protocols::antibody::clusters
• BasicCDRClusterSetOP : protocols::antibody::clusters
• BasicJobCOP : protocols::jobdist
• BasicJobOP : protocols::jobdist
• BasicJumpClaimerAP : protocols::topology_broker
• BasicJumpClaimerCAP : protocols::topology_broker
• BasicJumpClaimerCOP : protocols::topology_broker
• BasicJumpClaimerOP : protocols::topology_broker
• BasicRotamerLibrarySpecificationCOP : core::chemical::rotamers
• BasicRotamerLibrarySpecificationOP : core::chemical::rotamers
• BasicSimAnnealerRepackerCOP : protocols::pack_daemon
• BasicSimAnnealerRepackerOP : protocols::pack_daemon
• BasisPair : protocols::sewing
• BatchFeaturesCOP : protocols::features
• BatchFeaturesOP : protocols::features
• BatchJobInputterOP : protocols::jd2
• BBClaimAP : protocols::topology_broker::claims
• BBClaimCAP : protocols::topology_broker::claims
• BBClaimCOP : protocols::topology_broker::claims
• BBClaimOP : protocols::topology_broker::claims
• BBConRotMoverCOP : protocols::simple_moves
• BBConRotMoverOP : protocols::simple_moves
• BBDihedralSampler2DCOP : protocols::simple_moves::bb_sampler
• BBDihedralSampler2DOP : protocols::simple_moves::bb_sampler
• BBDihedralSampler3DCOP : protocols::simple_moves::bb_sampler
• BBDihedralSampler3DOP : protocols::simple_moves::bb_sampler
• BBDihedralSamplerBaseCOP : protocols::simple_moves::bb_sampler
• BBDihedralSamplerBaseOP : protocols::simple_moves::bb_sampler
• BBDihedralSamplerCOP : protocols::simple_moves::bb_sampler
• BBDihedralSamplerMoverCOP : protocols::simple_moves
• BBDihedralSamplerMoverOP : protocols::simple_moves
• BBDihedralSamplerNDCOP : protocols::simple_moves::bb_sampler
• BBDihedralSamplerNDOP : protocols::simple_moves::bb_sampler
• BBDihedralSamplerOP : protocols::simple_moves::bb_sampler
• BBG8T3AMoverCOP : protocols::simple_moves
• BBG8T3AMoverOP : protocols::simple_moves
• BBGaussianMoverCOP : protocols::simple_moves
• BBGaussianMoverOP : protocols::simple_moves
• BBTorsionSRFDCOP : core::fragment
• BBTorsionSRFDOP : core::fragment
• BDR_AP : protocols::forge::components
• BDR_CAP : protocols::forge::components
• BDR_COP : protocols::forge::components
• BDR_OP : protocols::forge::components
• BestMatchesCollectionCOP : protocols::match::output
• BestMatchesCollectionOP : protocols::match::output
• BestTotalScoreSelectorCOP : protocols::frag_picker
• BestTotalScoreSelectorOP : protocols::frag_picker
• BetaAlphaBetaMotifCOP : protocols::fldsgn::topology
• BetaAlphaBetaMotifOP : protocols::fldsgn::topology
• BetaAlphaBetaMotifs : protocols::fldsgn::topology
• BetaAlphaBetaMotifSetCOP : protocols::fldsgn::topology
• BetaAlphaBetaMotifSetOP : protocols::fldsgn::topology
• BetaSheetArchitectCOP : protocols::denovo_design::architects
• BetaSheetArchitectOP : protocols::denovo_design::architects
• BetaTurnDetectionCOP : protocols::features
• BetaTurnDetectionFeaturesCOP : protocols::features
• BetaTurnDetectionFeaturesOP : protocols::features
• BetaTurnDetectionOP : protocols::features
• BiasedFragmentMoverCOP : protocols::nonlocal
• BiasedFragmentMoverOP : protocols::nonlocal
• BiasedMonteCarloCOP : protocols::canonical_sampling
• BiasedMonteCarloOP : protocols::canonical_sampling
• BiasEnergyAP : protocols::canonical_sampling
• BiasEnergyCAP : protocols::canonical_sampling
• BiasEnergyCOP : protocols::canonical_sampling
• BiasEnergyOP : protocols::canonical_sampling
• BigBinConstraintCOP : core::scoring::constraints
• BigBinConstraintOP : core::scoring::constraints
• BinarySilentStructOP : core::io::silent
• BindingStrainFilterCOP : protocols::protein_interface_design::filters
• BindingStrainFilterOP : protocols::protein_interface_design::filters
• BinSelectorCOP : core::select::residue_selector
• BinSelectorOP : core::select::residue_selector
• BinTransitionCalculatorCOP : core::scoring::bin_transitions
• BinTransitionCalculatorCOPs : core::scoring::bin_transitions
• BinTransitionCalculatorOP : core::scoring::bin_transitions
• BinTransitionCalculatorOPs : core::scoring::bin_transitions
• BinTransitionDataCOP : core::scoring::bin_transitions
• BinTransitionDataCOPs : core::scoring::bin_transitions
• BinTransitionDataOP : core::scoring::bin_transitions
• BinTransitionDataOPs : core::scoring::bin_transitions
• BlosumScorerCOP : protocols::sewing::scoring
• BlosumScorerOP : protocols::sewing::scoring
• BlueprintArchitectCOP : protocols::denovo_design::architects
• BlueprintArchitectOP : protocols::denovo_design::architects
• BluePrintBDR_AP : protocols::fldsgn
• BluePrintBDR_CAP : protocols::fldsgn
• BluePrintBDR_COP : protocols::fldsgn
• BluePrintBDR_OP : protocols::fldsgn
• BluePrintCOP : protocols::parser
• BluePrintOP : protocols::flxbb , protocols::parser
• BoincCurrentPoseObserverOP : protocols::boinc
• BoltzmannFilterCOP : protocols::protein_interface_design::filters
• BoltzmannFilterOP : protocols::protein_interface_design::filters
• BoltzmannRotamerMoverCOP : protocols::simple_moves
• BoltzmannRotamerMoverOP : protocols::simple_moves
• bondangle_atom_set : core::chemical
• BondAngleDatabaseOP : protocols::features
• BondAnglePerturberCOP : protocols::kinematic_closure::perturbers
• BondAnglePerturberOP : protocols::kinematic_closure::perturbers
• BondedAtomAP : core::kinematics::tree
• BondedAtomCAP : core::kinematics::tree
• BondedAtomCOP : core::kinematics::tree
• BondedAtomOP : core::kinematics::tree
• BondedResidueSelectorCOP : core::select::residue_selector
• BondedResidueSelectorOP : core::select::residue_selector
• BondIndex : core::chemical::sdf
• BondInfos : protocols::denovo_design::components
• BondLength : core::chemical
• Bool3DGridCOP : protocols::match
• Bool3DGridOP : protocols::match
• Bools : core::scoring::motif
• bools : protocols::evolution
• BoundedQuotaContainer : protocols::frag_picker::quota
• BoundedQuotaContainerOP : protocols::frag_picker::quota
• BoundFuncCOP : core::scoring::constraints
• BoundFuncOP : core::scoring::constraints
• BoundingBox : protocols::loophash
• BridgeAP : protocols::forge::build
• BridgeCAP : protocols::forge::build
• BridgeChainsMoverCOP : protocols::denovo_design::movers
• BridgeChainsMoverOP : protocols::denovo_design::movers
• BridgeCOP : protocols::forge::build
• BridgeOP : protocols::forge::build
• BuildAlaPoseCOP : protocols::protein_interface_design::movers
• BuildAlaPoseOP : protocols::protein_interface_design::movers
• BuildDeNovoBackboneMoverCOP : protocols::denovo_design::movers
• BuildDeNovoBackboneMoverOP : protocols::denovo_design::movers
• BuildingBlockInterfaceOperationCOP : protocols::matdes
• BuildingBlockInterfaceOperationOP : protocols::matdes
• BuildInstructionAP : protocols::forge::build
• BuildInstructionCAP : protocols::forge::build
• BuildInstructionCOP : protocols::forge::build
• BuildInstructionOP : protocols::forge::build
• BuildManagerAP : protocols::forge::build
• BuildManagerCAP : protocols::forge::build
• BuildManagerCOP : protocols::forge::build
• BuildManagerOP : protocols::forge::build
• BuildPhasesCOP : protocols::denovo_design::components
• BuildPhasesOP : protocols::denovo_design::components
• BuildPositionCOP : protocols::motifs
• BuildPositionCOPs : protocols::motifs
• BuildPositionOP : protocols::motifs
• BuildPositionOPs : protocols::motifs
• BulgeApplierCOP : protocols::stepwise::screener
• BulgeApplierOP : protocols::stepwise::screener
• BulgeApplyMoverCOP : protocols::stepwise::modeler::rna::bulge
• BulgeApplyMoverOP : protocols::stepwise::modeler::rna::bulge
• BulgeUnApplyMoverCOP : protocols::stepwise::modeler::rna::bulge
• BulgeUnApplyMoverOP : protocols::stepwise::modeler::rna::bulge
• BumpGridCOP : protocols::match
• BumpGridOP : protocols::match
• BundleGridSamplerCOP : protocols::helical_bundle
• BundleGridSamplerCOPs : protocols::helical_bundle
• BundleGridSamplerHelperAP : protocols::helical_bundle
• BundleGridSamplerHelperCAP : protocols::helical_bundle
• BundleGridSamplerHelperCAPs : protocols::helical_bundle
• BundleGridSamplerHelperCOP : protocols::helical_bundle
• BundleGridSamplerHelperCOPs : protocols::helical_bundle
• BundleGridSamplerHelperOP : protocols::helical_bundle
• BundleGridSamplerHelperOPs : protocols::helical_bundle
• BundleGridSamplerOP : protocols::helical_bundle
• BundleGridSamplerOPs : protocols::helical_bundle
• BundleParametersAP : protocols::helical_bundle::parameters
• BundleParametersCAP : protocols::helical_bundle::parameters
• BundleParametersCAPs : protocols::helical_bundle::parameters
• BundleParametersCOP : protocols::helical_bundle::parameters
• BundleParametersCOPs : protocols::helical_bundle::parameters
• BundleParametersOP : protocols::helical_bundle::parameters
• BundleParametersOPs : protocols::helical_bundle::parameters
• BundleParametersSetAP : protocols::helical_bundle::parameters
• BundleParametersSetCAP : protocols::helical_bundle::parameters
• BundleParametersSetCAPs : protocols::helical_bundle::parameters
• BundleParametersSetCOP : protocols::helical_bundle::parameters
• BundleParametersSetCOPs : protocols::helical_bundle::parameters
• BundleParametersSetOP : protocols::helical_bundle::parameters
• BundleParametersSetOPs : protocols::helical_bundle::parameters
• BuriedSurfaceAreaFilterCOP : protocols::simple_filters
• BuriedSurfaceAreaFilterOP : protocols::simple_filters