scores a fragment by the root mean square deviation of Phi and Psi angles. More...

#include <CSScore.hh>

Inheritance diagram for protocols::frag_picker::scores::CSScore:

Public Member Functions
	CSScore (core::Size, core::Real, bool, CSTalosIO &)
	creates a Phi-Psi-based scoring function. More...

void	do_caching (VallChunkOP)

void	clean_up ()

bool	score (FragmentCandidateOP, FragmentScoreMapOP)

bool	cached_score (FragmentCandidateOP, FragmentScoreMapOP)

Public Member Functions inherited from protocols::frag_picker::scores::CachingScoringMethod
	CachingScoringMethod (core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)

Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
	FragmentScoringMethod (core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)

std::string &	get_score_name ()
	Returns a name of this scoring method. More...

core::Size	get_id ()
	Returns an integer index assigned to this scoring method by a scoring manager. More...

void	set_id (core::Size id)
	Sets a new integer index for this scoring method. More...

core::Size	get_priority ()
	Returns a priority of this scoring method. More...

core::Real	get_min_allowed_score ()
	Returns the lowest acceptable score value for this scoring method. More...

bool	get_use_lowest ()
	Returns the boolean choice on using the above lowest acceptable score value. More...

void	set_min_allowed_score (core::Real lowest_acceptable_value)
	Sets a new value of the lowest acceptable score. More...

Private Member Functions
void	read_talos_phi_psi (std::string const &)

Private Attributes
utility::io::ozstream	outfile_
	Print debugging informations about a score for a given fragment. More...

utility::vector1 < utility::vector1< std::pair < core::Size, core::Real > > >	target_shifts_

utility::vector1 < utility::vector1< std::pair < core::Real, core::Real > > >	scores_

std::string	cached_scores_id_

utility::vector1< bool >	existing_data_

Additional Inherited Members
Protected Attributes inherited from protocols::frag_picker::scores::FragmentScoringMethod
core::Size	id_

core::Size	priority_

std::string	name_

core::Real	lowest_acceptable_value_

bool	use_lowest_

Detailed Description

scores a fragment by the root mean square deviation of Phi and Psi angles.

Constructor & Destructor Documentation

protocols::frag_picker::scores::CSScore::CSScore	(	core::Size	priority,
		core::Real	lowest_acceptable_value,
		bool	use_lowest,
		CSTalosIO &	reader
	)

creates a Phi-Psi-based scoring function.

Phi-Psi angles from a fragment will be compared to relevant angles in a given pose, which should have the same number of residues a the query sequence

References protocols::frag_picker::CS2ndShift::shifts(), target_shifts_, and protocols::frag_picker::scores::trCSScore().