- c -

C : core::chemical::element , protocols::forge::build::SegmentInsertConnectionScheme
C1_ACETYLAMINO_SUGAR : core::chemical
C1_AMINO_SUGAR : core::chemical
C1_BRANCH_POINT : core::chemical
C1_DEOXY_SUGAR : core::chemical
C1_METHYLATED_SUGAR : core::chemical
C1_MODIFIED : core::chemical
C1_PHOSPHATE : core::chemical
C1_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR : core::chemical
C1_SULFATED_SUGAR : core::chemical
C1_SULFOAMINO_SUGAR : core::chemical
C2_ACETYLAMINO_SUGAR : core::chemical
C2_AMINO_SUGAR : core::chemical
C2_BRANCH_POINT : core::chemical
C2_DEOXY_SUGAR : core::chemical
C2_KETOALDONIC_ACID : core::chemical
C2_METHYLATED_SUGAR : core::chemical
C2_MODIFIED : core::chemical
C2_PHOSPHATE : core::chemical
C2_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR : core::chemical
C2_SULFATED_SUGAR : core::chemical
C2_SULFOAMINO_SUGAR : core::chemical
c2n : protocols::rigid
C3_ACETYLAMINO_SUGAR : core::chemical
C3_AMINO_SUGAR : core::chemical
C3_BRANCH_POINT : core::chemical
C3_DEOXY_SUGAR : core::chemical
C3_KETOALDONIC_ACID : core::chemical
C3_METHYLATED_SUGAR : core::chemical
C3_MODIFIED : core::chemical
C3_PHOSPHATE : core::chemical
C3_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR : core::chemical
C3_SULFATED_SUGAR : core::chemical
C3_SULFOAMINO_SUGAR : core::chemical
C4_ACETYLAMINO_SUGAR : core::chemical
C4_AMINO_SUGAR : core::chemical
C4_BRANCH_POINT : core::chemical
C4_DEOXY_SUGAR : core::chemical
C4_KETOALDONIC_ACID : core::chemical
C4_METHYLATED_SUGAR : core::chemical
C4_MODIFIED : core::chemical
C4_PHOSPHATE : core::chemical
C4_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR : core::chemical
C4_SULFATED_SUGAR : core::chemical
C4_SULFOAMINO_SUGAR : core::chemical
C5_ACETYLAMINO_SUGAR : core::chemical
C5_AMINO_SUGAR : core::chemical
C5_BRANCH_POINT : core::chemical
C5_DEOXY_SUGAR : core::chemical
C5_KETOALDONIC_ACID : core::chemical
C5_METHYLATED_SUGAR : core::chemical
C5_MODIFIED : core::chemical
C5_PHOSPHATE : core::chemical
C5_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR : core::chemical
C5_SULFATED_SUGAR : core::chemical
C5_SULFOAMINO_SUGAR : core::chemical
C6_ACETYLAMINO_SUGAR : core::chemical
C6_AMINO_SUGAR : core::chemical
C6_BRANCH_POINT : core::chemical
C6_DEOXY_SUGAR : core::chemical
C6_KETOALDONIC_ACID : core::chemical
C6_METHYLATED_SUGAR : core::chemical
C6_MODIFIED : core::chemical
C6_PHOSPHATE : core::chemical
C6_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR : core::chemical
C6_SULFATED_SUGAR : core::chemical
C6_SULFOAMINO_SUGAR : core::chemical
C7_ACETYLAMINO_SUGAR : core::chemical
C7_AMINO_SUGAR : core::chemical
C7_BRANCH_POINT : core::chemical
C7_DEOXY_SUGAR : core::chemical
C7_KETOALDONIC_ACID : core::chemical
C7_METHYLATED_SUGAR : core::chemical
C7_MODIFIED : core::chemical
C7_PHOSPHATE : core::chemical
C7_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR : core::chemical
C7_SULFATED_SUGAR : core::chemical
C7_SULFOAMINO_SUGAR : core::chemical
C8_ACETYLAMINO_SUGAR : core::chemical
C8_AMINO_SUGAR : core::chemical
C8_BRANCH_POINT : core::chemical
C8_DEOXY_SUGAR : core::chemical
C8_KETOALDONIC_ACID : core::chemical
C8_METHYLATED_SUGAR : core::chemical
C8_MODIFIED : core::chemical
C8_PHOSPHATE : core::chemical
C8_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR : core::chemical
C8_SULFATED_SUGAR : core::chemical
C8_SULFOAMINO_SUGAR : core::chemical
C9_ACETYLAMINO_SUGAR : core::chemical
C9_AMINO_SUGAR : core::chemical
C9_BRANCH_POINT : core::chemical
C9_DEOXY_SUGAR : core::chemical
C9_METHYLATED_SUGAR : core::chemical
C9_MODIFIED : core::chemical
C9_PHOSPHATE : core::chemical
C9_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR : core::chemical
C9_SULFATED_SUGAR : core::chemical
C9_SULFOAMINO_SUGAR : core::chemical
C_ALA : protocols::match
C_CAR : protocols::match
c_linked_NxC : protocols::carbohydrates
c_linked_WSTxC : protocols::carbohydrates
c_linked_WxxW : protocols::carbohydrates
C_METHYLAMIDATION : core::chemical
C_METHYLATED_SUGAR : core::chemical
C_pi_sp2 : core::chemical::orbitals
Ca : core::chemical::element
CA : protocols::frag_picker
CA2_COORDINATION : core::chemical
CA_CONNECT : core::chemical
CA_CONNECT2 : core::chemical
CA_CONNECT3 : core::chemical
CA_CONNECT4 : core::chemical
CA_CONNECT5 : core::chemical
CA_CONNECT6 : core::chemical
CA_CONNECT7 : core::chemical
CALC_RMS : core::pose::full_model_info
camelid_last_loop : protocols::antibody
CAN_CONTROL : protocols::environment::claims
CANONICAL_AA : core::chemical
CANONICAL_NUCLEIC : core::chemical
CARBOHYDRATE : core::chemical
CARBOXYLATION : core::chemical
cart_bonded : core::scoring
cart_bonded_angle : core::scoring
cart_bonded_improper : core::scoring
cart_bonded_length : core::scoring
cart_bonded_lr : core::scoring::methods
cart_bonded_proper : core::scoring
cart_bonded_ring : core::scoring
cart_bonded_torsion : core::scoring
CAVEAT : core::io::pdb
CB : protocols::frag_picker
cbeta : core::scoring
cbeta_smooth : core::scoring
Cd : core::chemical::element
cd_1b : core::scoring::methods
cd_2b : core::scoring::methods
cd_lr_2b : core::scoring::methods
CDFr : protocols::fldsgn::topology
cdr_end : protocols::antibody
cdr_region : protocols::antibody
cdr_start : protocols::antibody
CDRClusterEnum_start : protocols::antibody::clusters
CDRClusterEnum_stop : protocols::antibody::clusters
CDRClusterEnum_total : protocols::antibody::clusters
CDRDefinitionEnum_start : protocols::antibody
CDRDefinitionEnum_total : protocols::antibody
CDRLandmarkEnum_total : protocols::antibody
CDRNameEnum_proto_start : protocols::antibody
CDRNameEnum_proto_total : protocols::antibody
CDRNameEnum_start : protocols::antibody
CDRNameEnum_total : protocols::antibody
Ce : core::chemical::element
CEN : protocols::frag_picker , protocols::kinmatch
CEN_ANG : protocols::kinmatch
CEN_AXS : protocols::kinmatch
CEN_AXS_ORI : protocols::kinmatch
CEN_DOCK_SCORE : core::conformation::symmetry
cen_env_smooth : core::scoring
cen_hb : core::scoring
cen_pair_motif_degree : core::scoring
cen_pair_motifs : core::scoring
cen_pair_smooth : core::scoring
cen_rot_cbeta : core::scoring
cen_rot_dun : core::scoring
cen_rot_env : core::scoring
cen_rot_pair : core::scoring
cen_rot_pair_ang : core::scoring
cen_rot_pair_dih : core::scoring
cenpack : core::scoring
cenpack_smooth : core::scoring
center : core::conformation::membrane
CENTROID_DISTANCE : protocols::stepwise::screener
centroid_disulfide_energy : core::scoring::methods
centroid_neighbor_graph : core::scoring
centroid_relax : protocols::antibody::design
CENTROID_ROT_t : core::chemical
CENTROID_t : core::chemical
CENTROID_WITH_HA : core::chemical
Cf : core::chemical::element
CFr : protocols::fldsgn::topology
ch_bond : core::scoring
ch_bond_bb_bb : core::scoring
ch_bond_bb_sc : core::scoring
ch_bond_sc_sc : core::scoring
CHAIN_COLOR : protocols::viewer::graphics_states_param
CHAINBREAK : core::pose::rna
chainbreak : core::scoring
chainID : protocols::loops
CHARGED : core::chemical
chco : core::scoring::rna::chemical_shift
CHI : core::chemical::rna , core::id , core::scoring::dna
CHI1 : core::scoring
CHI2 : core::scoring
CHI3 : core::scoring
CHI4 : core::scoring
CHI_ATOM : core::chemical
chothia : core::scoring::sasa
Chothia : protocols::antibody
Chothia_Scheme : protocols::antibody
chrg : core::scoring::rna::chemical_shift
ci_1b : core::scoring::methods
ci_2b : core::scoring::methods
ci_lr_2b : core::scoring::methods
CIF_file : core::import_pose
CIS : core::chemical::rna
CISPEP : core::io::pdb
Cl : core::chemical::element
CLEAR_IF_CACHING_FRAGMENTS : protocols::forge::components::VLB_VallMemoryUsage
Closest : protocols::indexed_structure_store::filters
Cm : core::chemical::element
CMCT : core::pose::rna
Cn : core::chemical::element
Co : core::chemical::element
co : core::scoring
CO2_COORDINATION : core::chemical
COARSE : core::chemical
coarse_beadlj : core::scoring
coarse_chainbreak_constraint : core::scoring
coarse_fa_atr : core::scoring
coarse_fa_rep : core::scoring
coarse_fa_sol : core::scoring
COARSE_RNA_t : core::chemical
coil : protocols::loops::loop_closure::ccd
COMB : protocols::toolbox
comparison_type_total : protocols::simple_filters
COMPND : core::io::pdb
CONECT : core::io::pdb
ConjugableBond : core::chemical
CONST : core::scoring::nmr
constant_constraint : core::scoring
constrained_optimization_weight_func : protocols::optimize_weights
constraints_lr : core::scoring::methods
CONTACTS : core::conformation::symmetry
coordinate_constraint : core::scoring
copy_backbone_dihedrals : protocols::generalized_kinematic_closure::perturber
COPY_DOF : protocols::toolbox
CP_CROSSOVER_3 : core::scoring::etable::count_pair
CP_CROSSOVER_34 : core::scoring::etable::count_pair
CP_CROSSOVER_3FULL : core::scoring::etable::count_pair
CP_CROSSOVER_4 : core::scoring::etable::count_pair
CP_MULTIPLE_BONDS_OR_PSEUDOBONDS : core::scoring::etable::count_pair
CP_NO_BONDS : core::scoring::etable::count_pair
CP_ONE_BOND : core::scoring::etable::count_pair
CPK_COLOR : protocols::viewer::graphics_states_param
Cr : core::chemical::element
CriticalFailure : protocols::loops::loop_mover
CRYST1 : core::io::pdb
Cs : core::chemical::element
csa : core::scoring
csca : core::scoring::rna::chemical_shift
cst_res_data : core::scoring
cst_respair_data : core::scoring
cstJump : protocols::jumping
CTERM_AMIDATION : core::chemical
CTERM_CONNECT : core::chemical
Cu : core::chemical::element
CU2_COORDINATION : core::chemical
CUBIC : protocols::cryst
custom_atom_pair : core::scoring
cut_point : protocols::loops
CUTPOINT_LOWER : core::chemical
CUTPOINT_OPEN : core::pose::full_model_info
CUTPOINT_UPPER : core::chemical
CYCLIC : core::chemical
CYCLIZATION_METHOD_DISULFIDE : protocols::peptide_deriver
CYCLIZATION_METHOD_END_TO_END : protocols::peptide_deriver
CYCLIZE_RES : core::pose::full_model_info
CYS_C_ALPHA : core::scoring::disulfides
CYS_C_BETA : core::scoring::disulfides
CYS_CEN : core::scoring::disulfides
CYS_S_GAMMA : core::scoring::disulfides