resample_full_model.cc File Reference

stepwise-based seq_rebuild (for erraser) More...

#include <protocols/viewer/viewers.hh>
#include <protocols/stepwise/monte_carlo/util.hh>
#include <protocols/stepwise/monte_carlo/options/StepWiseMonteCarloOptions.hh>
#include <protocols/stepwise/monte_carlo/mover/StepWiseMasterMover.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <core/types.hh>
#include <devel/init.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/FullModelPoseBuilder.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/full_model_info/util.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <iostream>
#include <string>

Functions
void	resample_full_model_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.calebgeniesse.resample_full_model")

Detailed Description

stepwise-based seq_rebuild (for erraser)

Author

Caleb Geniesse, genie.nosp@m.sse@.nosp@m.stanf.nosp@m.ord..nosp@m.edu

Andy Watkins, amw57.nosp@m.9@st.nosp@m.anfor.nosp@m.d.ed.nosp@m.u

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cout, test.T009_Exceptions::e, utility::options::OptionKeys::options::exit, devel::init(), utility::excn::Exception::msg(), my_main(), option, and basic::options::OptionKeys::chemical::patch_selectors.

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, and resample_full_model_test().

Referenced by main().

void resample_full_model_test

(

)

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, pyrosetta::create_score_function, basic::options::OptionKeys::magnesium::monte_carlo, option, options, demo.D010_Pose_structure::pose, basic::options::OptionKeys::full_model::rna::rna, in::file::s(), basic::options::OptionKeys::full_model::sample_res, full_model::sample_res(), basic::options::OptionKeys::DisulfideInsertion::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::in::file::silent, basic::options::OptionKeys::inout::dbms::user, and score::weights().

Referenced by my_main().

Variable Documentation

basic::Tracer TR("apps.pilot.calebgeniesse.resample_full_model")

static