fragment_picker.cc File Reference

#include <devel/init.hh>
#include <utility/vector1.hh>
#include <core/sequence/Sequence.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <protocols/frag_picker/FragmentPicker.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/VallResidue.hh>
#include <protocols/frag_picker/FragmentSelectingRule.hh>
#include <protocols/frag_picker/VallChunkFilter.hh>
#include <protocols/frag_picker/scores/FragmentScoringMethod.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>

Functions
void	register_options ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	trace ("fragment_picker")

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cout, basic::Tracer::Debug, test.T009_Exceptions::e, devel::init(), frags::keep_all_protocol(), utility::excn::Exception::msg(), in::file::native(), option, options, frags::p_value_selection(), basic::prof_show(), frags::picking::quota_config_file(), frags::quota_protocol(), register_options(), trace, and basic::options::OptionKeys::inout::dbms::user.

void register_options

(

)

References frags::allowed_pdb(), frags::bounded_protocol(), frags::contacts::centroid_distance_scale_factor(), in::file::checkpoint(), frags::scoring::config(), constraints::cst_file(), in::path::database(), frags::denied_pdb(), frags::describe_fragments(), frags::contacts::dist_cutoffs(), in::file::fasta(), out::file::frag_prefix(), frags::frag_sizes(), frags::keep_all_protocol(), frags::nonlocal::min_contacts_per_res(), frags::contacts::min_seq_sep(), frags::n_candidates(), frags::n_frags(), in::file::native(), frags::nonlocal_pairs(), OPT, frags::scoring::profile_score(), in::file::pssm(), frags::picking::query_pos(), frags::picking::quota_config_file(), frags::quota_protocol(), in::file::s(), frags::picking::selecting_rule(), frags::picking::selecting_scorefxn(), frags::ss_pred(), in::file::talos_phi_psi(), in::file::torsion_bin_probs(), frags::contacts::type(), frags::write_ca_coordinates(), and in::file::xyz().

Referenced by main().

Variable Documentation

basic::Tracer trace("fragment_picker")

static

Referenced by main().