 |
Rosetta
2019.12
|
All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
|
Rosetta
2019.12
|
Functions | |
| BooleanOptionKey const | design ("antibody:design") |
| BooleanOptionKey const | view ("antibody:design:view") |
| StringOptionKey const | base_cdr_instructions ("antibody:design:base_cdr_instructions") |
| StringOptionKey const | cdr_instructions ("antibody:design:cdr_instructions") |
| StringOptionKey const | antibody_database ("antibody:design:antibody_database") |
| BooleanOptionKey const | paper_ab_db ("antibody:design:paper_ab_db") |
| StringOptionKey const | paper_ab_db_path ("antibody:design:paper_ab_db_path") |
| StringVectorOptionKey const | seq_design_cdrs ("antibody:design:seq_design_cdrs") |
| StringVectorOptionKey const | graft_design_cdrs ("antibody:design:graft_design_cdrs") |
| StringVectorOptionKey const | primary_cdrs ("antibody:design:primary_cdrs") |
| StringOptionKey const | mintype ("antibody:design:mintype") |
| StringVectorOptionKey const | disallow_aa ("antibody:design:disallow_aa") |
| IntegerOptionKey const | top_designs ("antibody:design:top_designs") |
| BooleanOptionKey const | high_mem_mode ("antibody:design:high_mem_mode") |
| IntegerOptionKey const | cdr_set_cache_limit ("antibody:design:cdr_set_cache_limit") |
| StringOptionKey const | design_protocol ("antibody:design:design_protocol") |
| BooleanOptionKey const | run_relax ("antibody:design:run_relax") |
| BooleanOptionKey const | run_interface_analyzer ("antibody:design:run_interface_analyzer") |
| StringVectorOptionKey const | paratope ("antibody:design:paratope") |
| StringVectorOptionKey const | epitope ("antibody:design:epitope") |
| BooleanOptionKey const | use_epitope_constraints ("antibody:design:use_epitope_constraints") |
| RealOptionKey const | dihedral_cst_weight ("antibody:design:dihedral_cst_weight") |
| RealOptionKey const | atom_pair_cst_weight ("antibody:design:atom_pair_cst_weight") |
| BooleanOptionKey const | global_dihedral_cst_scoring ("antibody:design:global_dihedral_cst_scoring") |
| BooleanOptionKey const | global_atom_pair_cst_scoring ("antibody:design:global_atom_pair_cst_scoring") |
| BooleanOptionKey const | do_dock ("antibody:design:do_dock") |
| IntegerOptionKey const | outer_cycle_rounds ("antibody:design:outer_cycle_rounds") |
| IntegerOptionKey const | inner_cycle_rounds ("antibody:design:inner_cycle_rounds") |
| IntegerOptionKey const | dock_cycle_rounds ("antibody:design:dock_cycle_rounds") |
| RealOptionKey const | interface_dis ("antibody:design:interface_dis") |
| RealOptionKey const | neighbor_dis ("antibody:design:neighbor_dis") |
| BooleanOptionKey const | use_outliers ("antibody:design:use_outliers") |
| BooleanOptionKey const | use_H3_graft_outliers ("antibody:design:use_H3_graft_outliers") |
| BooleanOptionKey const | use_only_H3_kinked ("antibody:design:use_only_H3_kinked") |
| BooleanOptionKey const | design_antigen ("antibody:design:design_antigen") |
| BooleanOptionKey const | design_framework ("antibody:design:design_framework") |
| BooleanOptionKey const | conservative_framework_design ("antibody:design:conservative_framework_design") |
| BooleanOptionKey const | design_H3_stem ("antibody:design:design_H3_stem") |
| BooleanOptionKey const | design_proline ("antibody:design:design_proline") |
| RealOptionKey const | sample_zero_probs_at ("antibody:design:sample_zero_probs_at") |
| BooleanOptionKey const | force_mutate_framework_for_cluster ("antibody:design:force_mutate_framework_for_cluster") |
| BooleanOptionKey const | no_profile_probabilities ("antibody:design:no_profile_probabilities") |
| IntegerOptionKey const | seq_design_stats_cutoff ("antibody:design:seq_design_stats_cutoff") |
| IntegerOptionKey const | seq_design_profile_samples ("antibody:design:seq_design_profile_samples") |
| BooleanOptionKey const | idealize_graft_cdrs ("antibody:design:idealize_graft_cdrs") |
| StringVectorOptionKey const | add_backrub_pivots ("antibody:design:add_backrub_pivots") |
| RealOptionKey const | inner_kt ("antibody:design:inner_kt") |
| RealOptionKey const | outer_kt ("antibody:design:outer_kt") |
| BooleanOptionKey const | random_start ("antibody:design:random_start") |
| BooleanOptionKey const | adapt_graft ("antibody:design:adapt_graft") |
| BooleanOptionKey const | enable_adapt_graft_cartesian ("antibody:design:enable_adapt_graft_cartesian") |
| BooleanOptionKey const | remove_antigen ("antibody:design:remove_antigen") |
| BooleanOptionKey const | add_graft_log_to_pdb ("antibody:design:add_graft_log_to_pdb") |
| BooleanOptionKey const | mutate_framework_for_cluster ("antibody:design:mutate_framework_for_cluster") |
| BooleanOptionKey const antibody::design::adapt_graft | ( | "antibody:design:adapt_graft" | ) |
| StringVectorOptionKey const antibody::design::add_backrub_pivots | ( | "antibody:design:add_backrub_pivots" | ) |
| BooleanOptionKey const antibody::design::add_graft_log_to_pdb | ( | "antibody:design:add_graft_log_to_pdb" | ) |
| StringOptionKey const antibody::design::antibody_database | ( | "antibody:design:antibody_database" | ) |
| RealOptionKey const antibody::design::atom_pair_cst_weight | ( | "antibody:design:atom_pair_cst_weight" | ) |
| StringOptionKey const antibody::design::base_cdr_instructions | ( | "antibody:design:base_cdr_instructions" | ) |
| StringOptionKey const antibody::design::cdr_instructions | ( | "antibody:design:cdr_instructions" | ) |
| IntegerOptionKey const antibody::design::cdr_set_cache_limit | ( | "antibody:design:cdr_set_cache_limit" | ) |
| BooleanOptionKey const antibody::design::conservative_framework_design | ( | "antibody:design:conservative_framework_design" | ) |
| BooleanOptionKey const antibody::design::design | ( | "antibody:design" | ) |
| BooleanOptionKey const antibody::design::design_antigen | ( | "antibody:design:design_antigen" | ) |
| BooleanOptionKey const antibody::design::design_framework | ( | "antibody:design:design_framework" | ) |
| BooleanOptionKey const antibody::design::design_H3_stem | ( | "antibody:design:design_H3_stem" | ) |
| BooleanOptionKey const antibody::design::design_proline | ( | "antibody:design:design_proline" | ) |
| StringOptionKey const antibody::design::design_protocol | ( | "antibody:design:design_protocol" | ) |
| RealOptionKey const antibody::design::dihedral_cst_weight | ( | "antibody:design:dihedral_cst_weight" | ) |
| StringVectorOptionKey const antibody::design::disallow_aa | ( | "antibody:design:disallow_aa" | ) |
| BooleanOptionKey const antibody::design::do_dock | ( | "antibody:design:do_dock" | ) |
| IntegerOptionKey const antibody::design::dock_cycle_rounds | ( | "antibody:design:dock_cycle_rounds" | ) |
| BooleanOptionKey const antibody::design::enable_adapt_graft_cartesian | ( | "antibody:design:enable_adapt_graft_cartesian" | ) |
| StringVectorOptionKey const antibody::design::epitope | ( | "antibody:design:epitope" | ) |
| BooleanOptionKey const antibody::design::force_mutate_framework_for_cluster | ( | "antibody:design:force_mutate_framework_for_cluster" | ) |
| BooleanOptionKey const antibody::design::global_atom_pair_cst_scoring | ( | "antibody:design:global_atom_pair_cst_scoring" | ) |
| BooleanOptionKey const antibody::design::global_dihedral_cst_scoring | ( | "antibody:design:global_dihedral_cst_scoring" | ) |
| StringVectorOptionKey const antibody::design::graft_design_cdrs | ( | "antibody:design:graft_design_cdrs" | ) |
| BooleanOptionKey const antibody::design::high_mem_mode | ( | "antibody:design:high_mem_mode" | ) |
| BooleanOptionKey const antibody::design::idealize_graft_cdrs | ( | "antibody:design:idealize_graft_cdrs" | ) |
| IntegerOptionKey const antibody::design::inner_cycle_rounds | ( | "antibody:design:inner_cycle_rounds" | ) |
| RealOptionKey const antibody::design::inner_kt | ( | "antibody:design:inner_kt" | ) |
| RealOptionKey const antibody::design::interface_dis | ( | "antibody:design:interface_dis" | ) |
| StringOptionKey const antibody::design::mintype | ( | "antibody:design:mintype" | ) |
| BooleanOptionKey const antibody::design::mutate_framework_for_cluster | ( | "antibody:design:mutate_framework_for_cluster" | ) |
| RealOptionKey const antibody::design::neighbor_dis | ( | "antibody:design:neighbor_dis" | ) |
| BooleanOptionKey const antibody::design::no_profile_probabilities | ( | "antibody:design:no_profile_probabilities" | ) |
| IntegerOptionKey const antibody::design::outer_cycle_rounds | ( | "antibody:design:outer_cycle_rounds" | ) |
| RealOptionKey const antibody::design::outer_kt | ( | "antibody:design:outer_kt" | ) |
| BooleanOptionKey const antibody::design::paper_ab_db | ( | "antibody:design:paper_ab_db" | ) |
| StringOptionKey const antibody::design::paper_ab_db_path | ( | "antibody:design:paper_ab_db_path" | ) |
| StringVectorOptionKey const antibody::design::paratope | ( | "antibody:design:paratope" | ) |
| StringVectorOptionKey const antibody::design::primary_cdrs | ( | "antibody:design:primary_cdrs" | ) |
| BooleanOptionKey const antibody::design::random_start | ( | "antibody:design:random_start" | ) |
| BooleanOptionKey const antibody::design::remove_antigen | ( | "antibody:design:remove_antigen" | ) |
| BooleanOptionKey const antibody::design::run_interface_analyzer | ( | "antibody:design:run_interface_analyzer" | ) |
| BooleanOptionKey const antibody::design::run_relax | ( | "antibody:design:run_relax" | ) |
| RealOptionKey const antibody::design::sample_zero_probs_at | ( | "antibody:design:sample_zero_probs_at" | ) |
| StringVectorOptionKey const antibody::design::seq_design_cdrs | ( | "antibody:design:seq_design_cdrs" | ) |
| IntegerOptionKey const antibody::design::seq_design_profile_samples | ( | "antibody:design:seq_design_profile_samples" | ) |
| IntegerOptionKey const antibody::design::seq_design_stats_cutoff | ( | "antibody:design:seq_design_stats_cutoff" | ) |
| IntegerOptionKey const antibody::design::top_designs | ( | "antibody:design:top_designs" | ) |
| BooleanOptionKey const antibody::design::use_epitope_constraints | ( | "antibody:design:use_epitope_constraints" | ) |
| BooleanOptionKey const antibody::design::use_H3_graft_outliers | ( | "antibody:design:use_H3_graft_outliers" | ) |
| BooleanOptionKey const antibody::design::use_only_H3_kinked | ( | "antibody:design:use_only_H3_kinked" | ) |
| BooleanOptionKey const antibody::design::use_outliers | ( | "antibody:design:use_outliers" | ) |
| BooleanOptionKey const antibody::design::view | ( | "antibody:design:view" | ) |
1.8.7