contactMap.cc File Reference

simple application for creating a contact map from multiple models of the same protein. More...

#include <string>
#include <devel/init.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector1.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/contact_map/ContactMap.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/contactMap.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>

Typedefs
using	ContactMap = protocols::contact_map::ContactMap

Functions
utility::vector1< ContactMap >	processRegions (std::string region_def, core::pose::Pose const &pose)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	tr ("contactMap")

Detailed Description

simple application for creating a contact map from multiple models of the same protein.

Author

Joerg Schaarschmidt

Typedef Documentation

using ContactMap = protocols::contact_map::ContactMap

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, in::path::database(), contactMap::distance_cutoff(), contactMap::distance_matrix(), test.T009_Exceptions::e, in::file::extra_res(), in::file::extra_res_cen(), in::file::extra_res_fa(), basic::Tracer::Info, devel::init(), in::file::l(), utility::excn::Exception::msg(), OPT, basic::options::option, options, demo.D010_Pose_structure::pose, contactMap::prefix(), processRegions(), contactMap::region_def(), in::file::residue_type_set(), contactMap::row_format(), in::file::s(), in::file::silent(), in::file::silent_struct_type(), in::file::tags(), and tr.

utility::vector1<ContactMap> processRegions	(	std::string	region_def,
		core::pose::Pose const &	pose
	)

References basic::options::OptionKeys::cm::cm, erraser_single_res_analysis::data, basic::options::OptionKeys::contactMap::distance_cutoff, basic::options::OptionKeys::contactMap::distance_matrix, basic::options::OptionKeys::AnchoredDesign::filters::filters, pyrosetta.distributed.docs::movers, basic::options::option, options, test.T008_Serialization::oss, basic::options::OptionKeys::coupled_moves::output_prefix, make_symmdef_file_denovo::pos, basic::options::OptionKeys::contactMap::prefix, basic::options::OptionKeys::contactMap::region_def, basic::options::OptionKeys::contactMap::row_format, and tag.

Referenced by main().

Variable Documentation

basic::Tracer tr("contactMap")

static

Referenced by create_theozyme_pdb(), main(), numeric::linear_algebra::qzval(), numeric::linear_algebra::qzvec(), and basic::TracerImpl::set_ios_hook().