rosetta_scripts.cc File Reference

The application file for rosetta_scripts, aka jd2_scripting or the parser. More...

#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/MPIWorkPoolJobDistributor.hh>
#include <protocols/jd2/MPIFileBufJobDistributor.hh>
#include <protocols/jd2/BOINCJobDistributor.hh>
#include <protocols/viewer/viewers.hh>
#include <core/types.hh>
#include <protocols/abinitio/ClassicAbinitio.hh>
#include <devel/init.hh>
#include <basic/options/option.hh>
#include <protocols/rosetta_scripts/RosettaScriptsParser.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/filters/FilterFactory.hh>
#include <protocols/moves/MoverFactory.hh>
#include <core/select/residue_selector/ResidueSelectorFactory.hh>
#include <core/pack/task/operation/TaskOperationFactory.hh>
#include <core/pack/task/operation/ResLvlTaskOperationFactory.hh>
#include <basic/options/keys/parser.OptionKeys.gen.hh>
#include <basic/options/keys/jd2.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <fstream>

Functions
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.rosetta_scripts.rosetta_scripts")

Detailed Description

The application file for rosetta_scripts, aka jd2_scripting or the parser.

Author

Sarel Fleishman (sarel.nosp@m.f@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) – Added template script generation and "-parser:info" flag (in-app help for RosettaScripts).

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

dock_design_scripting provides an xml-based scripting capability to run rosetta movers and filters defined in a text file provided by the user. A full documentation of dock_design_scripting is available at: manual_doxygen/applications/app_dock_design.dox

References basic::Error(), utility::options::OptionKeys::options::exit, basic::options::OptionKeys::parser::info, devel::init(), my_main(), basic::options::OptionKeys::jd2::ntrials, basic::options::option, options, basic::options::OptionKeys::parser::output_schema, basic::options::OptionKeys::parser::protocol, register_options(), basic::options::OptionKeys::inout::dbms::user, basic::options::OptionKeys::parser::view, and basic::options::OptionKeys::antibody::design::view.

void* my_main

(

void *

)

Referenced by main().

Variable Documentation

basic::Tracer TR("apps.public.rosetta_scripts.rosetta_scripts")

static