References basic::options::OptionKeys::legacy_sewing::assembly_type, basic::options::OptionKeys::legacy_sewing::box_length, utility::io::oc::cerr, demo.D060_Folding::counter, basic::options::OptionKeys::inout::dbms::database_name, basic::Tracer::Debug, basic::options::OptionKeys::legacy_sewing::do_not_remove_connection_inconsistencies, utility::options::OptionKeys::options::exit, utility::io::izstream::getline(), utility::io::izstream::good(), basic::options::OptionKeys::legacy_sewing::hash_tag_only_terminal_Es, devel::init(), basic::options::OptionKeys::in::file::l, basic::options::OptionKeys::legacy_sewing::legacy_sewing, basic::options::OptionKeys::legacy_sewing::max_clash_score, basic::options::OptionKeys::legacy_sewing::max_models, min(), basic::options::OptionKeys::legacy_sewing::min_hash_score, basic::options::OptionKeys::legacy_sewing::mode, basic::options::OptionKeys::legacy_sewing::model_file_name, utility::mpi_nprocs(), utility::mpi_rank(), name, basic::options::OptionKeys::legacy_sewing::num_procs, basic::options::OptionKeys::legacy_sewing::num_segments_to_match, basic::options::option, options, demo.D010_Pose_structure::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::legacy_sewing::rank, utility::receive_integer_from_anyone(), utility::receive_integer_from_node(), basic::options::OptionKeys::legacy_sewing::score_file_name, basic::options::OptionKeys::mh::path::scores, utility::send_integer_to_node(), utility::excn::Exception::show(), basic::options::OptionKeys::legacy_sewing::starting_model, utility::to_string(), basic::options::TR, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, value, and basic::Tracer::TracerProxy::visible().