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| file   | AlignmentFileGeneratorMover.cc | 
|   | Given a model file, edge file ,and one or more input structures, generates alignment files for use with AppendAssemblyMover. 
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| file   | AlignmentFileGeneratorMover.fwd.hh | 
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| file   | AlignmentFileGeneratorMover.hh | 
|   | Given a model file, edge file ,and one or more input structures, generates alignment files for use with AppendAssemblyMover. 
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| file   | AlignmentFileGeneratorMoverCreator.hh | 
|   | Given a model file, edge file ,and one or more input structures, generates alignment files for use with AppendAssemblyMover. 
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| file   | AlignmentGenerator.cc | 
|   | Determines all possible alignments for an edge given the two SewSegments involved. Also contains the mechanisms for reading an edge file. 
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| file   | AlignmentGenerator.fwd.hh | 
|   | Determines all possible alignments for an edge given the two SewSegments involved. Also contains the mechanisms for reading an edge file. 
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| file   | AlignmentGenerator.hh | 
|   | Determines all possible alignments for an edge given the two SewSegments involved. Also contains the mechanisms for reading an edge file. 
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| file   | BasisMapGenerator.cc | 
|   | Given a model file, edge file ,and one or more input structures, generates alignment files for use with AppendAssemblyMover. 
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| file   | BasisMapGenerator.fwd.hh | 
|   | Generates alignments for a given set of segments and stores them in a BasisMap. 
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| file   | BasisMapGenerator.hh | 
|   | Given a model file, edge file ,and one or more input structures, generates alignment files for use with AppendAssemblyMover. 
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| file   | EdgeMapGenerator.cc | 
|   | Class used to generate edge files for use with SEWING protocols. 
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| file   | EdgeMapGenerator.fwd.hh | 
|   | Class used to generate edge files for use with SMART_SEWING devel. 
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| file   | EdgeMapGenerator.hh | 
|   | Class used to generate edge files for use with SEWING protocols. 
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| file   | Hasher.cc | 
|   | A geometric hashing class used by the SEWING protocol. 
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| file   | Hasher.fwd.hh | 
|   | A geometric hashing class used by the SEWING protocol. 
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| file   | Hasher.hh | 
|   | A geometric hashing class used by the SEWING protocol. 
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| file   | hasher_data.hh | 
|   | Data storage for the Hasher. 
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| file   | LigandBindingResPlacer.cc | 
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| file   | LigandBindingResPlacer.fwd.hh | 
|   | Uses predetermined coordinate frames to place coordinating residues in SEWING proteins. 
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| file   | LigandBindingResPlacer.hh | 
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| file   | ModelFileReader.cc | 
|   | a reader of SEWING model files 
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| file   | ModelFileReader.fwd.hh | 
|   | a reader of SEWING model files 
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| file   | ModelFileReader.hh | 
|   | a reader of SEWING model files 
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