count_pair Directory Reference

Directory dependency graph for count_pair:

Files
file	CountPair1B.fwd.hh
	Count pair for residue pairs connected with one bond.
file	CountPair1B.hh
	Count pair for residue pairs connected with one bond, where the crossover from excluding to counting atom pair interactions is at 3 bonds.
file	CountPair2B.fwd.hh
	Count pair for residue pairs separated by another residue. If you need to weight interactions between atoms separated by four bonds, you could find yourself in this situation. For instance, C in residue 1 and N in residue 3 are separated by four bonds, and the other CountPair options don't handle this correctly.
file	CountPair2B.hh
	Count pair for residue pairs separated by another residue. If you need to weight interactions between atoms separated by four bonds, you could find yourself in this situation. For instance, C in residue 1 and N in residue 3 are separated by four bonds, and the other CountPair options don't handle this correctly.
file	CountPairAll.cc
	Count pair for residues where all atom pairs should be counted.
file	CountPairAll.fwd.hh
	Count pair for residues where all atom pairs should be counted.
file	CountPairAll.hh
	Count pair for residues where all atom pairs should be counted.
file	CountPairCrossover3.cc
file	CountPairCrossover3.fwd.hh
file	CountPairCrossover3.hh
	Count pair for residue pairs connected with one bond, where the crossover from excluding to counting atom pair interactions is at 3 bonds.
file	CountPairCrossover34.cc
file	CountPairCrossover34.fwd.hh
file	CountPairCrossover34.hh
	Count pair for residue pairs where the crossover from excluding to counting atom pair interactions is at 3 bonds, but where the weighting is different for 3 bonds versus 4.
file	CountPairCrossover3full.cc
file	CountPairCrossover3full.fwd.hh
file	CountPairCrossover3full.hh
file	CountPairCrossover4.cc
	Count pair for residue pairs where the crossover from excluding to counting atom pair interactions is at 4 bonds.
file	CountPairCrossover4.fwd.hh
	Count pair for residue pairs where the crossover from excluding to counting atom pair interactions is at 4 bonds.
file	CountPairCrossover4.hh
	Count pair for residue pairs where the crossover from excluding to counting atom pair interactions is at 4 bonds.
file	CountPairFactory.cc
file	CountPairFactory.fwd.hh
file	CountPairFactory.hh
file	CountPairFunction.cc
	Count pair base class implementation.
file	CountPairFunction.fwd.hh
	Count pair base class forward declaration.
file	CountPairFunction.hh
	Count pair base class interface.
file	CountPairGeneric.cc
file	CountPairGeneric.fwd.hh
file	CountPairGeneric.hh
file	CountPairIntraRes.fwd.hh
file	CountPairIntraRes.hh
	Count pair for residue pairs connected with one bond, where the crossover from excluding to counting atom pair interactions is at 3 bonds.
file	CountPairNone.cc
	Count pair for residues where all atom pairs should be counted.
file	CountPairNone.fwd.hh
	Count pair for residues where all atom pairs should be counted.
file	CountPairNone.hh
	Count pair for residues where all atom pairs should be counted.
file	types.hh