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| file   | AtomTreeCollection.cc | 
|   | Implementation for the classes holding sets of AtomTrees used during variuos packing+minimizing schemes. 
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| file   | AtomTreeCollection.fwd.hh | 
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| file   | AtomTreeCollection.hh | 
|   | Forward declaration for the classes holding sets of AtomTrees used during variuos packing+minimizing schemes. 
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| file   | AtomTreeSCMinMinimizerMap.cc | 
|   | Class for identifying the sidechain DOFs in the AtomTree which are free during any particular call to the minimizer. 
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| file   | AtomTreeSCMinMinimizerMap.fwd.hh | 
|   | Foward declaration for the class identifying sidechain DOFs in the AtomTree which are free during any particular call to the minimizer. 
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| file   | AtomTreeSCMinMinimizerMap.hh | 
|   | Class for identifying the sidechain DOFs in the AtomTree which are free during any particular call to the minimizer. 
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| file   | CartSCMinMinimizerMap.cc | 
|   | Class for identifying the sidechain DOFs in the AtomTree which are free during any particular call to the minimizer. 
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| file   | CartSCMinMinimizerMap.fwd.hh | 
|   | Foward declaration for the class identifying sidechain DOFs in the AtomTree which are free during any particular call to the minimizer. 
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| file   | CartSCMinMinimizerMap.hh | 
|   | Class for identifying the sidechain DOFs in the AtomTree which are free during any particular call to the minimizer. 
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| file   | CartSCMinMultifunc.cc | 
|   | Class for interfacing with the minimizer during sidechain minimization. 
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| file   | CartSCMinMultifunc.fwd.hh | 
|   | Forward declaration of the interface class to the minimizer during sidechain minimization. 
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| file   | CartSCMinMultifunc.hh | 
|   | Class for interfacing with the minimizer during sidechain minimization. 
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| file   | SCMinMinimizerMap.fwd.hh | 
|   | Foward declaration for the class identifying sidechain DOFs in the AtomTree which are free during any particular call to the minimizer. 
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| file   | SCMinMinimizerMap.hh | 
|   | Class for identifying the sidechain DOFs in the AtomTree which are free during any particular call to the minimizer. 
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| file   | SCMinMultifunc.cc | 
|   | Class for interfacing with the minimizer during sidechain minimization. 
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| file   | SCMinMultifunc.fwd.hh | 
|   | Forward declaration of the interface class to the minimizer during sidechain minimization. 
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| file   | SCMinMultifunc.hh | 
|   | Class for interfacing with the minimizer during sidechain minimization. 
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| file   | SidechainStateAssignment.cc | 
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| file   | SidechainStateAssignment.fwd.hh | 
|   | Foward declaration for the SidechainStateAssignment class. 
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| file   | SidechainStateAssignment.hh | 
|   | Declaration for the class that holds a state assignment for an entire system under continuous sidechain optimization. 
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