Here is a list of all class members with links to the classes they belong to:

- x -

• x() : core::fragment::BBTorsionSRFD , core::fragment::picking_old::vall::VallResidue , core::io::AtomInformation , core::kinematics::tree::Atom , core::kinematics::tree::Atom_ , core::pose::rna::Atom_Bin , core::scoring::atomic_depth::point3d , core::scoring::packing::Ball , core::scoring::packstat::Circle , core::scoring::packstat::Event , core::scoring::packstat::Point , core::scoring::packstat::SimplePDB_Atom , core::scoring::PQR , core::sequence::Cell , protocols::frag_picker::VallResidue
• X() : protocols::frags::RMSVallData
• x : protocols::pockets::CCluster::Cxyz , protocols::pockets::PCluster::Cxyz
• X : protocols::sic_dock::Rose
• x : protocols::sic_dock::Rose , protocols::simple_filters::Quat
• X : protocols::sparta::PDB_Entry
• x0() : core::scoring::func::CircularHarmonicFunc , core::scoring::func::FlatHarmonicFunc , core::scoring::func::HarmonicFunc , core::scoring::func::MinMultiHarmonicFunc , core::scoring::func::SigmoidFunc , core::scoring::func::SquareWell2Func , core::scoring::func::SquareWellFunc , core::scoring::func::TopOutFunc
• x0_ : core::scoring::func::AmberPeriodicFunc , core::scoring::func::CharmmPeriodicFunc , core::scoring::func::CircularHarmonicFunc , core::scoring::func::CircularPowerFunc , core::scoring::func::FlatHarmonicFunc , core::scoring::func::HarmonicFunc , core::scoring::func::KarplusFunc , core::scoring::func::MinMultiHarmonicFunc , core::scoring::func::PeriodicFunc , core::scoring::func::SigmoidFunc , core::scoring::func::SquareWell2Func , core::scoring::func::SquareWellFunc , core::scoring::func::TopOutFunc
• x1_ : protocols::sic_dock::NoPoseXYX_Func
• x2_ : protocols::sic_dock::NoPoseXYX_Func
• x_ : core::fragment::picking_old::vall::VallResidue , core::scoring::electron_density::poseCoord , protocols::frag_picker::VallResidue
• X_ : protocols::frags::RMSVallData
• x_ : protocols::membrane::SpinAroundPartnerMover
• X_all_ : protocols::scoring::methods::pcs2::PcsDataCenter , protocols::scoring::methods::pcs::PCS_data , protocols::scoring::methods::pcsTs1::PCS_data_Ts1 , protocols::scoring::methods::pcsTs2::PCS_data_Ts2 , protocols::scoring::methods::pcsTs3::PCS_data_Ts3 , protocols::scoring::methods::pcsTs4::PCS_data_Ts4
• x_center_ : protocols::scoring::methods::pcs::GridSearchIterator , protocols::scoring::methods::pcsTs1::GridSearchIterator_Ts1 , protocols::scoring::methods::pcsTs2::GridSearchIterator_Ts2 , protocols::scoring::methods::pcsTs3::GridSearchIterator_Ts3 , protocols::scoring::methods::pcsTs4::GridSearchIterator_Ts4
• x_current_ : protocols::scoring::methods::pcs::GridSearchIterator , protocols::scoring::methods::pcsTs1::GridSearchIterator_Ts1 , protocols::scoring::methods::pcsTs2::GridSearchIterator_Ts2 , protocols::scoring::methods::pcsTs3::GridSearchIterator_Ts3 , protocols::scoring::methods::pcsTs4::GridSearchIterator_Ts4
• x_max : protocols::hotspot_hashing::CartesianSearchPattern , protocols::hotspot_hashing::RotationSearchPattern
• x_middle_ : core::scoring::func::LinearPenaltyFunction
• x_min : protocols::hotspot_hashing::CartesianSearchPattern , protocols::hotspot_hashing::RotationSearchPattern
• x_range() : core::scoring::func::SquareWell2Func
• x_range_ : core::scoring::func::SquareWell2Func
• x_sampling : protocols::hotspot_hashing::CartesianSearchPattern , protocols::hotspot_hashing::RotationSearchPattern
• x_values() : protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSamplerValueRange
• x_values_ : protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSamplerValueRange
• x_vec_ : protocols::scoring::methods::pcs2::GridSearchIteratorCA
• x_vector_ : protocols::scoring::methods::pcs::GridSearchIterator , protocols::scoring::methods::pcsTs1::GridSearchIterator_Ts1 , protocols::scoring::methods::pcsTs2::GridSearchIterator_Ts2 , protocols::scoring::methods::pcsTs3::GridSearchIterator_Ts3 , protocols::scoring::methods::pcsTs4::GridSearchIterator_Ts4
• xa_ : protocols::hybridization::TMalign
• xav_ : protocols::evaluation::PCA
• xbin_ : core::scoring::func::CircularGeneral1D_Func
• XC : protocols::sic_dock::Rose
• xC_ : core::scoring::func::CircularSigmoidalFunc
• xcorn_ : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• XCR : protocols::sic_dock::Rose
• xd() : core::scoring::methods::GoapEnergy
• xd_ : core::scoring::methods::GoapEnergy
• Xdim_ : core::scoring::packstat::Octree2D
• xdim_ : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• xFactor : protocols::cluster::calibur::Clustering
• xform() : core::scoring::mhc_epitope_energy::MHCEpitopeEnergySetup , core::scoring::motif::ResPairMotif
• xform_score_BB_PH_ : core::scoring::motif::MotifHashManager
• xform_score_BB_PO_ : core::scoring::motif::MotifHashManager
• xform_score_frags_ : core::scoring::motif::MotifHashManager
• xform_score_PH_PO_ : core::scoring::motif::MotifHashManager
• xform_scores_BB_BB_ : core::scoring::motif::MotifHashManager
• xform_scores_SC_BB_ : core::scoring::motif::MotifHashManager
• xform_scores_SC_SC_ : core::scoring::motif::MotifHashManager
• Xforms : protocols::sic_dock::RigidScore
• XformScore() : core::scoring::motif::XformScore
• XfoxmScore() : protocols::sic_dock::XfoxmScore
• Xfrag() : core::scoring::motif::Xfrag
• XfragMap : core::scoring::motif::XfragSet
• xfragmap_ : core::scoring::motif::XfragSet
• XfragSet() : core::scoring::motif::XfragSet
• Xfres() : core::scoring::motif::Xfres
• xfres_ : core::scoring::motif::XfragSet
• XH_cutoff_ : core::scoring::NeighborList
• XH_cutoff_wide_ : core::scoring::NeighborList
• xhi : core::scoring::etable::ExtraQuadraticRepulsion
• xlab() : core::sequence::DP_Matrix
• xlabels_ : core::sequence::DP_Matrix
• xlen_ : protocols::hybridization::TMalign
• xlo : core::scoring::etable::ExtraQuadraticRepulsion
• xmax() : protocols::magnesium::SampleGrid
• xmax_ : protocols::magnesium::SampleGrid
• xmaxs_ : protocols::sasa_scores::PPoly
• xmin() : protocols::magnesium::SampleGrid
• xmin_ : core::scoring::func::CircularGeneral1D_Func , protocols::magnesium::SampleGrid
• xmins_ : protocols::sasa_scores::PPoly
• xml_element_name() : protocols::parser::FragmentReader
• xml_input_pose_ : protocols::pose_creation::MergePDBMover
• xml_name_ : protocols::abinitio::abscript::RigidChunkCM
• xml_schema_attributes() : core::pack::task::operation::ProhibitResidueProperties , core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes , core::pack::task::operation::ReadResfile , core::pack::task::operation::RestrictToResidueProperties , core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes
• XmlObjects() : protocols::rosetta_scripts::XmlObjects
• xmlscript_ : protocols::rpc::JSON_RPC
• xn() : core::scoring::methods::GoapEnergy
• xn_ : core::scoring::methods::GoapEnergy
• xnum_points() : core::scoring::geometric_solvation::GridInfo
• xnum_points_ : core::scoring::geometric_solvation::GridInfo
• xorigin() : core::scoring::geometric_solvation::GridInfo
• xorigin_ : core::scoring::geometric_solvation::GridInfo
• xPercentile : protocols::cluster::calibur::Clustering
• xref_ : protocols::evaluation::PCA
• xresno_ : protocols::hybridization::TMalign
• xs_ : protocols::sic_dock::scores::MotifHashRigidScore
• xsd_architect_type_definition_w_attributes() : protocols::denovo_design::architects::DeNovoArchitectFactory
• xsd_constraint_generator_type_definition_w_attributes() : protocols::constraint_generator::ConstraintGeneratorFactory
• xsd_for_rosetta_scripts() : protocols::rosetta_scripts::RosettaScriptsParser
• xsd_type_definition_w_attributes() : protocols::ligand_docking::rdf::RDFFunctionFactory
• xsee_ : protocols::sic_dock::scores::MotifHashRigidScore
• xseh_ : protocols::sic_dock::scores::MotifHashRigidScore
• xsel() : core::io::rna::RDAT
• xsel_ : core::io::rna::RDAT
• xsel_refine() : core::io::rna::RDAT
• xsel_refine_ : core::io::rna::RDAT
• xshe_ : protocols::sic_dock::scores::MotifHashRigidScore
• xshh_ : protocols::sic_dock::scores::MotifHashRigidScore
• xspp_ : protocols::sic_dock::scores::MotifHashRigidScore
• xstep() : core::scoring::geometric_solvation::GridInfo
• xstep_ : core::scoring::geometric_solvation::GridInfo
• xt_ : protocols::hybridization::TMalign
• XtalMLEnergy() : core::scoring::cryst::XtalMLEnergy
• XtalMLEnergyCreator() : core::scoring::cryst::XtalMLEnergyCreator
• xtm_ : protocols::hybridization::TMalign
• xval_end_ramp_ : protocols::moves::FastLinearFunc
• xval_start_ramp_ : protocols::moves::FastLinearFunc
• XX_cutoff_ : core::scoring::NeighborList
• XX_cutoff_wide_ : core::scoring::NeighborList
• xx_init() : core::optimization::MinimizerOptions
• xx_init_ : core::optimization::MinimizerOptions
• xyz() : core::chemical::ICoorAtomID , core::conformation::Atom , core::conformation::Conformation , core::conformation::orbitals::OrbitalXYZCoords , core::conformation::PointGraphVertexData , core::conformation::Residue , core::io::ResidueInformation , core::kinematics::AtomTree , core::kinematics::tree::Atom , core::kinematics::tree::Atom_ , core::pack::annealer::PointDwell , core::pose::MiniPose , core::pose::Pose , core::scoring::elec::electrie::ElecAtom , core::scoring::FACTSResidueInfo , core::scoring::func::FourPointsFunc , core::scoring::hbonds::graph::AtomInfo , core::scoring::hbonds::hbtrie::HBAtom , core::scoring::lkball::lkbtrie::LKBAtom , core::scoring::packing::Ball , core::scoring::packstat::CavityBall , core::scoring::packstat::SimplePDB_Atom , core::scoring::packstat::Sphere , core::scoring::PDatom , core::scoring::PDinter , core::scoring::PDvertex , core::scoring::power_diagram::PDinter , core::scoring::power_diagram::PDsphere , core::scoring::power_diagram::PDvertex , core::scoring::power_diagram::SAnode , core::scoring::SAnode , core::scoring::vdwaals::VDWAtom , protocols::md::MDBase , protocols::normalmode::NormalMode , protocols::qsar::scoring_grid::ChargeAtom , protocols::simple_moves::AtomHashNode
• xyz2index_in_cell() : core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• xyz_ : core::conformation::Atom , core::conformation::orbitals::OrbitalXYZCoords , core::conformation::PointGraphVertexData , core::io::ResidueInformation , core::scoring::FACTSResidueInfo , core::scoring::hbonds::graph::AtomInfo , core::scoring::hbonds::hbtrie::HBAtom , core::scoring::packing::Ball , core::scoring::packstat::CavityBall , core::scoring::PDatom , core::scoring::PDinter , core::scoring::PDvertex , core::scoring::power_diagram::PDinter , core::scoring::power_diagram::PDsphere , core::scoring::power_diagram::PDvertex , core::scoring::vdwaals::VDWAtom , protocols::frag_picker::DiversifyCrmsdByClustering , protocols::md::MDBase , protocols::normalmode::NormalMode
• xyz_bin_halfwidths_ : protocols::match::OccupiedSpaceHash , protocols::match::VoxelSetIterator
• xyz_bin_widths_ : protocols::match::HitHasher , protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::OccupiedSpaceHash , protocols::match::VoxelSetIterator
• xyz_claim_ : protocols::environment::claims::VirtResClaim
• xyz_coords_need_updating_ : core::kinematics::AtomTree
• xyz_delta_ : protocols::nmr::pcs::PCSLigandTransformMover::LMMinPCSDataRef
• xyz_file() : protocols::recces::options::RECCES_Options
• xyz_file_ : protocols::recces::options::RECCES_Options
• XYZ_Func : core::scoring::constraints::SequenceProfileConstraint , protocols::constraints_additional::SequenceCoupling1BDConstraint , protocols::constraints_additional::SequenceCouplingConstraint
• xyz_local_ : core::scoring::lkball::WaterBuilder
• xyz_moved_ : core::conformation::Conformation
• xyz_obs_hub_ : core::conformation::Conformation
• xyz_start_ : protocols::nmr::pcs::PCSLigandTransformMover::LMMinPCSDataRef
• xyz_step() : protocols::magnesium::MgScanner , protocols::magnesium::SampleGrid
• xyz_step_ : protocols::magnesium::MgScanner , protocols::magnesium::SampleGrid
• xyz_target() : core::scoring::constraints::LocalCoordinateConstraint
• xyz_target_ : core::scoring::constraints::CoordinateConstraint , core::scoring::constraints::LocalCoordinateConstraint
• xyz_updated_ : protocols::backbone_moves::local_backbone_mover::FreePeptide
• xyza_ : core::scoring::TMscore
• xyzb_ : core::scoring::TMscore
• XYZClaim() : protocols::environment::claims::XYZClaim
• XYZEvent : core::conformation::Conformation , core::conformation::signals::XYZEvent
• xyzhash_ : protocols::sic_dock::CBScore
• xyzMatrix : protocols::simple_moves::BBConRotMover , protocols::symmetry::DetectSymmetry
• xyzStripeHashPose() : core::pose::xyzStripeHashPose
• xyzStripeHashPoseWithMeta() : protocols::sic_dock::xyzStripeHashPoseWithMeta
• xyzVector : protocols::simple_moves::BBGaussianMover , protocols::symmetry::DetectSymmetry