calibur.cc File Reference

#include <devel/init.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <cmath>
#include <cstdlib>
#include <protocols/cluster/calibur/AdjacentList.hh>
#include <protocols/cluster/calibur/Clustering.hh>
#include <protocols/cluster/calibur/SimPDB.hh>
#include <utility/string_constants.hh>
#include <utility/string_util.hh>

Macros
#define	RANDOM_DECOY_SIZE_FOR_THRESHOLD   101
#define	NUM_TRIALS_FOR_THRESHOLD   16

Functions
	OPT_1GRP_KEY (String, input, pdb_list) OPT_1GRP_KEY(Integer
start	OPT_1GRP_KEY (Integer, res, end) OPT_1GRP_KEY(String
start chains	OPT_1GRP_KEY (Real, strategy, thres) OPT_1GRP_KEY(Boolean
start chains nofilter	OPT_1GRP_KEY (Integer, strategy, thres_finder) int main(int argc

Variables
	res
start chains	strategy
start chains nofilter char **	argv

Macro Definition Documentation

#define NUM_TRIALS_FOR_THRESHOLD   16

#define RANDOM_DECOY_SIZE_FOR_THRESHOLD   101

Function Documentation

OPT_1GRP_KEY	(	String	,
		input	,
		pdb_list
	)

start OPT_1GRP_KEY	(	Integer	,
		res	,
		end
	)

start chains OPT_1GRP_KEY	(	Real	,
		strategy	,
		thres
	)

start chains nofilter OPT_1GRP_KEY	(	Integer	,
		strategy	,
		thres_finder
	)

Variable Documentation

start chains nofilter char** argv

Referenced by main().

start res

Referenced by utility::tag::add_schema_restrictions_for_strings(), analyze_poses_for_convergence(), HDmakerMover::bb_score(), ExposedStrandMover::bb_score(), binder::class_name(), correlation(), MPDomainAssembly::create_residue_from_olc(), numeric::statistics::Dawson(), gen_pep_bb_sequential(), PerformanceBenchmark::getOneReport(), PerformanceBenchmark::getReport(), initialize_peptide(), basic::database::insert_or_ignore(), utility::options::OptionCollection::load_option_from_file(), basic::resource_manager::locator::DatabaseResourceLocator::locate_resource_stream(), main(), ScoreEachBenchmark::run_long_ranged_two_body_energy(), ScoreEachBenchmark::run_one_body_energy(), ScoreEachBenchmark::run_short_ranged_two_body_energy(), supercharge::set_surface(), binder::simplify_std_class_name(), basic::database::table_exists(), and test_sugar().

start chains strategy