toolbox Directory Reference

Directory dependency graph for toolbox:

Directories
directory	match_enzdes_util
directory	pose_manipulation
directory	rigid_body
directory	rotamer_set_operations
directory	sample_around

Files
file	CalcInterNeighborGroup.cc
	This is meant for finding interfaces between protein domains - like protein-protein interfaces but within a protein. It's more flexible than that, though. You define groups of residues within a protein (say, the N and C terminal domains). You then define which pairs of groups you are interested in. This calculator returns the union of the sets of residues at the interfaces between these domains/groups. This calculator contains a superset of the functionality of some of the other calculators, but is less efficient in simple cases. The pose does NOT have to have been scored.
file	CalcInterNeighborGroup.fwd.hh
file	CalcInterNeighborGroup.hh
	This calculator is meant for finding interfaces between protein domains - like protein-protein interfaces but within a protein. It's more flexible than that, though. You define groups of residues within a protein (say, the N and C terminal domains). You then define which pairs of groups you are interested in. This calculator returns the union of the sets of residues at the interfaces between these domains/groups. This calculator contains a superset of the functionality of some of the other calculators, but is less efficient in simple cases. The pose does NOT have to have been scored.
file	Cluster.cc
file	Cluster.hh
file	Cluster.impl.hh
	template implementation for clustering of silentstructs that are provided by iterators
file	DecoySetEvaluation.cc
file	DecoySetEvaluation.fwd.hh
file	DecoySetEvaluation.hh
file	DecoySetEvaluation.impl.hh
file	EnergyLandscapeEvaluator.cc
	Evaluates a set of score/rms points.
file	EnergyLandscapeEvaluator.fwd.hh
	Evaluates a set of score/rms points.
file	EnergyLandscapeEvaluator.hh
	Evaluates a set of score/rms points.
file	IGEdgeReweighters.cc
file	IGEdgeReweighters.hh
file	InteratomicVarianceMatrix.cc
file	InteratomicVarianceMatrix.hh
file	KCluster.cc
file	KCluster.fwd.hh
file	KCluster.hh
	Fast clustering algorithm for large silent file.
file	NetworkAlgorithms.cc
	calculate various network properties from poses
file	NetworkAlgorithms.fwd.hh
	FOrward header for class that analyzes properties of residue networks.
file	NetworkAlgorithms.hh
	Computes network properties of a pose.
file	PyReturnValuePolicyTest.cc
file	PyReturnValuePolicyTest.hh
	A few functions test how PyRosetta handle boost ReturnValuePolicy.
file	SamplerPlusPlus.fwd.hh
	Abstract Base Class for Sampler generator.
file	SamplerPlusPlus.hh
	Abstract Base Class for Sampler generator.
file	SamplerPlusPlusType.hh
file	superimpose.cc
file	superimpose.hh