residue_selector Directory Reference

Directory dependency graph for residue_selector:

Files
file	AndResidueSelector.cc
	The AndResidueSelector combines logic from multiple ResidueSelectors.
file	AndResidueSelector.fwd.hh
	Forward declaration of a class that combines ResidueSelector logic.
file	AndResidueSelector.hh
	The AndResidueSelector combines logic from multiple ResidueSelectors.
file	AsymmetricUnitSelector.cc
file	AsymmetricUnitSelector.fwd.hh
	A residue selector for selecting the master subunit in a symmetrical pose. If not symmetrical, will select the whole pose.
file	AsymmetricUnitSelector.hh
	A residue selector for selecting the master subunit in a symmetrical pose. If not symmetrical, will select the whole pose.
file	AsymmetricUnitSelectorCreator.hh
	A residue selector for selecting the master subunit in a symmetrical pose. If not symmetrical, will select the whole pose.
file	BinSelector.cc
file	BinSelector.fwd.hh
	A ResidueSelector that selects residues based on their torsion bin (e.g. ABEGO bin).
file	BinSelector.hh
	A ResidueSelector that selects residues based on their torsion bin (e.g. ABEGO bin).
file	BondedResidueSelector.cc
	Selects residues with chemical bonds to the passed input residues.
file	BondedResidueSelector.fwd.hh
	Forward declaration of a class that selects residues bonded to a given residue.
file	BondedResidueSelector.hh
	Selects residues with chemical bonds to the passed input residues.
file	CachedResidueSubset.cc
	CacheableData wrapper for ResidueSubset storage.
file	CachedResidueSubset.fwd.hh
file	CachedResidueSubset.hh
file	ChainSelector.cc
	The ChainSelector combines logic from multiple ResidueSelectors.
file	ChainSelector.fwd.hh
	The ChainSelector selects all the residues from a given chain, given either as a number or a character.
file	ChainSelector.hh
	The ChainSelector selects all the residues from a given chain, given either as a number or a character. Clears the passed ResidueSubset.
file	CloseContactResidueSelector.cc
file	CloseContactResidueSelector.fwd.hh
	A class that finds the neighboring residues for a particular residue by looking at atom-atom distances.
file	CloseContactResidueSelector.hh
	A class that finds the neighboring residues for a particular residue by looking at atom-atom distances.
file	CloseContactResidueSelectorCreator.hh
	Class declaration for the CloseContactResidueSelectorCreator.
file	DensityFitResidueSelector.cc
file	DensityFitResidueSelector.fwd.hh
	Select residues that have a good fit to provided electron denisty map.
file	DensityFitResidueSelector.hh
	Select residues that have a bad fit to provided electron denisty map.
file	FalseResidueSelector.cc
	The FalseResidueSelector creates an appropriate all-false vector.
file	FalseResidueSelector.fwd.hh
file	FalseResidueSelector.hh
	The FalseResidueSelector creates an appropriate all-false vector.
file	GlycanLayerSelector.cc
file	GlycanLayerSelector.fwd.hh
	A selector for choosing glycan residues based on their layer - as measured by the residue distance to the start of the glycan tree.
file	GlycanLayerSelector.hh
	A selector for choosing glycan residues based on their layer - as measured by the residue distance to the start of the glycan tree.
file	GlycanLayerSelectorCreator.hh
	A selector for choosing glycan residues based on their layer - as measured by the residue distance to the start of the glycan tree.
file	GlycanPositionSelector.cc
file	GlycanPositionSelector.fwd.hh
	A Residue Selector for selecting specific parts of arbitrary glycans.
file	GlycanPositionSelector.hh
	A Residue Selector for selecting specific parts of arbitrary glycans.
file	GlycanResidueSelector.cc
file	GlycanResidueSelector.fwd.hh
	A ResidueSelector for carbohydrates and individual carbohydrate trees.
file	GlycanResidueSelector.hh
	A ResidueSelector for carbohydrates and individual carbohydrate trees.
file	GlycanSequonsSelector.cc
file	GlycanSequonsSelector.fwd.hh
	Find glycosylation sequons in pose.
file	GlycanSequonsSelector.hh
	Find glycosylation sequons in pose.
file	InterGroupInterfaceByVectorSelector.cc
file	InterGroupInterfaceByVectorSelector.fwd.hh
file	InterGroupInterfaceByVectorSelector.hh
file	JumpDownstreamSelector.cc
file	JumpDownstreamSelector.fwd.hh
	Forward declaration of a class that selects residues downstream of a specified jump.
file	JumpDownstreamSelector.hh
	The JumpDownstreamSelector selects residues downstream of a given jump in a FoldTree.
file	JumpUpstreamSelector.cc
file	JumpUpstreamSelector.fwd.hh
	Forward declaration of a class that selects residues upstream of a specified jump.
file	JumpUpstreamSelector.hh
	The JumpUpstreamSelector selects residues downstream of a given jump in a FoldTree.
file	LayerSelector.cc
	A ResidueSelector for selecting residues based on layers defined by burial (core, boundary, surface, etc.).
file	LayerSelector.fwd.hh
	Forward definitions for a ResidueSelector for selecting residues based on layers defined by burial (core, boundary, surface, etc.).
file	LayerSelector.hh
	Header file for a ResidueSelector for selecting residues based on layers defined by burial (core, boundary, surface, etc.).
file	NeighborhoodResidueSelector.cc
file	NeighborhoodResidueSelector.fwd.hh
	Forward declaration of a class that selects residues from the neighborhood of a set of focus residues.
file	NeighborhoodResidueSelector.hh
	The NeighborhoodResidueSelector selects residues in a given proximity of set focus residues.
file	NotResidueSelector.cc
	The NotResidueSelector negates the logic of its loaded ResidueSelector.
file	NotResidueSelector.fwd.hh
file	NotResidueSelector.hh
	The NotResidueSelector negates the logic of its loaded ResidueSelector.
file	NumNeighborsSelector.cc
	The NumNeighborsSelector identifies all residues that have at least X neighbors within a distance D.
file	NumNeighborsSelector.fwd.hh
	Forward declaration of a class that identifies residues with at least X neighbors within a cutoff distance D.
file	NumNeighborsSelector.hh
	The NumNeighborsSelector identifies residues that have at least X neighbors within a distance Y. Clears the given ResidueSubset.
file	OrResidueSelector.cc
	The OrResidueSelector combines logic from multiple ResidueSelectors.
file	OrResidueSelector.fwd.hh
	Forward declaration of a class that negates ResidueSelector logic.
file	OrResidueSelector.hh
	The OrResidueSelector combines logic from multiple ResidueSelectors.
file	PhiSelector.cc
file	PhiSelector.fwd.hh
	A ResidueSelector that selects alpha-amino acids that are either in the positive phi or negative phi region of Ramachandran space (depending on user preferences).
file	PhiSelector.hh
	A ResidueSelector that selects alpha-amino acids that are either in the positive phi or negative phi region of Ramachandran space (depending on user preferences).
file	PrimarySequenceNeighborhoodSelector.cc
file	PrimarySequenceNeighborhoodSelector.fwd.hh
	Forward declaration of a class that selects residues using their names.
file	PrimarySequenceNeighborhoodSelector.hh
	The PrimarySequenceNeighborhoodSelector selects residues using a string containing residue names.
file	PrimarySequenceNeighborhoodSelectorCreator.hh
file	RandomGlycanFoliageSelector.cc
file	RandomGlycanFoliageSelector.fwd.hh
	Selects a random carbohydrate residue from a subset or selector, then selects the rest of the glycan foliage. Used for sampling.
file	RandomGlycanFoliageSelector.hh
	Selects a random carbohydrate residue from a subset or selector, then selects the rest of the glycan foliage. Used for sampling.
file	RandomResidueSelector.cc
file	RandomResidueSelector.fwd.hh
	Forward declaration of a class that selects residues at random.
file	RandomResidueSelector.hh
	The RandomResidueSelector selects residues using a string containing residue names.
file	ResidueIndexSelector.cc
file	ResidueIndexSelector.fwd.hh
	Forward declaration of a class that selects residues using a string containing pose indices.
file	ResidueIndexSelector.hh
	The ResidueIndexSelector selects residues using a string containing pose indices.
file	ResidueInMembraneSelector.cc
file	ResidueInMembraneSelector.fwd.hh
	Forward declaration of a class that selects residues either in or out of the membrane.
file	ResidueInMembraneSelector.hh
	The ResidueInMembraneSelector selects residues either in or out of the membrane.
file	ResidueInSequenceMotifSelector.cc
file	ResidueInSequenceMotifSelector.fwd.hh
	Select residues by motif search.
file	ResidueInSequenceMotifSelector.hh
	Select residues by motif search.
file	ResidueNameSelector.cc
file	ResidueNameSelector.fwd.hh
	Forward declaration of a class that selects residues using their names.
file	ResidueNameSelector.hh
	The ResidueNameSelector selects residues using a string containing residue names.
file	ResiduePDBInfoHasLabelSelector.cc
	The ResiduePDBInfoHasLabelSelector selects residues using a string containing residue names.
file	ResiduePDBInfoHasLabelSelector.fwd.hh
	Forward declaration of a class that selects residues using their names.
file	ResiduePDBInfoHasLabelSelector.hh
	The ResiduePDBInfoHasLabelSelector selects residues using a string containing residue names.
file	ResiduePropertySelector.cc
file	ResiduePropertySelector.fwd.hh
	A residue selector that selects based on set residue properties.
file	ResiduePropertySelector.hh
	A residue selector that selects based on set residue properties.
file	ResiduePropertySelectorCreator.hh
	A residue selector that selects based on set residue properties.
file	ResidueRanges.cc
	The ResidueRanges class identifies contiguous segments of a pose from a subset.
file	ResidueRanges.fwd.hh
	Forward declaration of a class that identifies continguous segments from a subset of residues from a Pose.
file	ResidueRanges.hh
	The ResidueRanges class identifies a subset of residues from a Pose.
file	ResidueSelector.cc
	The ResidueSelector class identifies a subset of residues from a Pose.
file	ResidueSelector.fwd.hh
	Forward declaration of a class that identifies a subset of residues from a Pose.
file	ResidueSelector.hh
	The ResidueSelector class identifies a subset of residues from a Pose.
file	ResidueSelectorCreator.fwd.hh
	Forward declaration of a class that instantiates a particular ResidueSelector.
file	ResidueSelectorCreator.hh
	Class for instantiating a particular ResidueSelector.
file	ResidueSelectorCreators.hh
	Class declarations for the ResidueSelectorCreators for a set of simple ResidueSelectors.
file	ResidueSelectorFactory.cc
	Implementation of the class for instantiating arbitrary ResidueSelectors from a string –> ResidueSelectorCreator map.
file	ResidueSelectorFactory.hh
	Class for instantiating arbitrary ResidueSelectors from a string –> ResidueSelectorCreator map.
file	ResidueSelectorRegistrator.hh
	Declaration of the template class for registrating ResidueSelectorCreators with the ResidueSelectorFactory.
file	ResidueSpanSelector.cc
file	ResidueSpanSelector.fwd.hh
	Forward declaration of a class that selects residues using span endpoints.
file	ResidueSpanSelector.hh
	The ResidueSpanSelector selects residues using start/end defintions.
file	ResidueVector.cc
	The ResidueVector class identifies contiguous segments of a pose from a subset.
file	ResidueVector.fwd.hh
	Forward declaration of a class that identifies continguous segments from a subset of residues from a Pose.
file	ResidueVector.hh
	The ResidueVector class identifies a subset of residues from a Pose.
file	ReturnResidueSubsetSelector.cc
file	ReturnResidueSubsetSelector.fwd.hh
file	ReturnResidueSubsetSelector.hh
	A simple selector that returns the set subset. This to enable simplification of code-based interfaces to residue selectors, so that one may accept only selectors, but using this selector, we can set subsets. This greatly reduces the interface complexity and code-complexity arising from accepting BOTH ResidueSubsets and ResidueSelectors (Which I'm terribly sick of doing at this point).
file	ScoreTermValueBasedSelector.cc
	Selects residues based on per residue score of the given score_type. Residues with scores equal to or within the lower and upper thresholds are selected.
file	ScoreTermValueBasedSelector.fwd.hh
file	ScoreTermValueBasedSelector.hh
	Selects residues based on per residue score of the given score_type. Residues with scores equal to or below the given threshold are selected.
file	SecondaryStructureSelector.cc
	The SecondaryStructureSelector selects residues based on secondary structure.
file	SecondaryStructureSelector.fwd.hh
	Forward declaration of a class to select residues based on their secondary structure.
file	SecondaryStructureSelector.hh
	The SecondaryStructureSelector selects residues based on their secondary structure.
file	SelectorLogicParser.cc
file	SelectorLogicParser.fwd.hh
	Construct selectors as logical combinations of other residue selectors using AND, NOT, and OR.
file	SelectorLogicParser.hh
	Construct selectors as logical combinations of other residue selectors using AND, NOT, and OR.
file	SSElementSelector.cc
	The SSElementSelector selects based on the secondary element using DSSP.
file	SSElementSelector.fwd.hh
	The SSElementSelector selects based on the secondary element using DSSP.
file	SSElementSelector.hh
	The SSElementSelector selects based on the secondary element using DSSP.
file	SymmetricalResidueSelector.cc
	The SymmetricalResidueSelector selects symmetrical counterparts of the input residues.
file	SymmetricalResidueSelector.fwd.hh
	Forward declaration of a class that selects symmetrical versions of residues.
file	SymmetricalResidueSelector.hh
	The SymmetricalResidueSelector selects symmetrically generated residues of a given ResidueSelector input.
file	SymmetricalResidueSelectorCreator.hh
	Creator for symmetrical residue selector.
file	TrueResidueSelector.cc
	The TrueResidueSelector creates an appropriate all-true vector.
file	TrueResidueSelector.fwd.hh
	Forward declaration of a class that combines ResidueSelector logic.
file	TrueResidueSelector.hh
	The TrueResidueSelector creates an appropriate all-true vector.
file	util.cc
	Utility functions for the residue selector classes, primarily, in constructing XML-Schema type definitions.
file	util.hh
	Utility functions for the residue selector classes, primarily, in constructing XML-Schema type definitions.