carbohydrates Directory Reference

Directory dependency graph for carbohydrates:

Files
file	CreateGlycanSequonMover.cc
	Mutates residues to create a potential glycosylation site using known sequence motifs of N- or C- linked glycans. Includes options for Enhanced Sequons for N-linked glycans that have been shown to have higher rates of glycosylation as well as other positions that have been shown to influence the glycosylation chemistry.
file	CreateGlycanSequonMover.fwd.hh
	Mutates residues to create a potential glycosylation site using known sequence motifs of N- or C- linked glycans. Includes options for Enhanced Sequons for N-linked glycans that have been shown to have higher rates of glycosylation as well as other positions that have been shown to influence the glycosylation chemistry.
file	CreateGlycanSequonMover.hh
	Mutates residues to create a potential glycosylation site using known sequence motifs of N- or C- linked glycans. Includes options for Enhanced Sequons for N-linked glycans that have been shown to have higher rates of glycosylation as well as other positions that have been shown to influence the glycosylation chemistry.
file	CreateGlycanSequonMoverCreator.hh
	Mutates residues to create a potential glycosylation site using known sequence motifs of N- or C- linked glycans. Includes options for Enhanced Sequons for N-linked glycans that have been shown to have higher rates of glycosylation as well as other positions that have been shown to influence the glycosylation chemistry.
file	GlycanSampler.cc
	Main mover for Glycan Relax, which optimizes glycans in a pose.
file	GlycanSampler.fwd.hh
	Main mover for Glycan Relax, which optimizes glycans in a pose.
file	GlycanSampler.hh
	Main mover for Glycan Relax, which optimizes glycans in a pose.
file	GlycanSamplerCreator.hh
	Main mover for Glycan Relax, which optimizes glycans in a pose.
file	GlycanTreeMinMover.cc
	A class that selects the downstream branch from residues in a movemap/selector, and minimizes those residues if on in the primary glycan movemap. Multiple Applies randomly select a different residue in the movemap/selector.
file	GlycanTreeMinMover.fwd.hh
	A class that selects the downstream branch from residues in a movemap/selector, and minimizes those residues if on in the primary glycan movemap. Multiple Applies randomly select a different residue in the movemap/selector.
file	GlycanTreeMinMover.hh
	A class that selects the downstream branch from residues in a movemap/selector, and minimizes those residues if on in the primary glycan movemap. Multiple Applies randomly select a different residue in the movemap/selector.
file	GlycanTreeMinMoverCreator.hh
	A class that selects the downstream branch from residues in a movemap/selector, and minimizes those residues if on in the primary glycan movemap. Multiple Applies randomly select a different residue in the movemap/selector.
file	GlycanTreeModeler.cc
	A protocol for optimizing glycan trees using the GlycanSampler from the base of the tree out to the leaves.
file	GlycanTreeModeler.fwd.hh
	A protocol for optimizing glycan trees using the GlycanSampler from the base of the tree out to the leaves.
file	GlycanTreeModeler.hh
	A protocol for optimizing glycan trees using the GlycanSampler from the base of the tree out to the leaves.
file	GlycanTreeModelerCreator.hh
	A protocol for optimizing glycan trees using the GlycanSampler from the base of the tree out to the leaves.
file	IdealizeAnomericHydrogens.cc
	Mover to idealize carbohydrate anomeric hydrogens.
file	IdealizeAnomericHydrogens.fwd.hh
file	IdealizeAnomericHydrogens.hh
	Mover to idealize carbohydrate anomeric hydrogens.
file	IdealizeAnomericHydrogensCreator.hh
	This code changes all of the dihedrals of a particular glycosidic linkage based on database info, esentially sampling carbohydrate dihedral conformers of two residues.
file	LinkageConformerMover.cc
	This code changes all of the dihedrals of a particular glycosidic linkage based on database info, essentially sampling carbohydrate dihedral conformers of two residues.
file	LinkageConformerMover.fwd.hh
	This code changes all of the dihedrals of a particular glycosidic linkage based on database info, essentially sampling carbohydrate dihedral conformers of two residues.
file	LinkageConformerMover.hh
	This code changes all of the dihedrals of a particular glycosidic linkage based on database info, esentially sampling carbohydrate dihedral conformers of two residues.
file	LinkageConformerMoverCreator.hh
	This code changes all of the dihedrals of a particular glycosidic linkage based on database info, esentially sampling carbohydrate dihedral conformers of two residues.
file	RingPlaneFlipMover.cc
	Method definitions for RingPlaneFlipMover.
file	RingPlaneFlipMover.fwd.hh
	Forward declarations for RingPlaneFlipMover.
file	RingPlaneFlipMover.hh
	Declarations and simple accessor/mutator definitions for RingPlaneFlipMover.
file	RingPlaneFlipMoverCreator.hh
	Method declarations for RingPlaneFlipMoverCreator.
file	SimpleGlycosylateMover.cc
	A mover for glycosylation of common biological glycosylations.
file	SimpleGlycosylateMover.fwd.hh
	A mover for glycosylation of common biological glycosylations.
file	SimpleGlycosylateMover.hh
	A mover for glycosylation of common biological glycosylations.
file	SimpleGlycosylateMoverCreator.hh
	A mover for glycosylation of common biological glycosylations.
file	TautomerizeAnomerMover.cc
	Method definitions for TautomerizeAnomerMover.
file	TautomerizeAnomerMover.fwd.hh
	Forward declarations for TautomerizeAnomerMover.
file	TautomerizeAnomerMover.hh
	Declarations and simple accessor/mutator definitions for TautomerizeAnomerMover.
file	TautomerizeAnomerMoverCreator.hh
	Method declarations for TautomerizeAnomerMoverCreator.
file	util.cc
	Util functions for Carbohydrates.
file	util.hh
	Util functions for Carbohydrates.