simple_moves Directory Reference

Directory dependency graph for simple_moves:

Directories
directory	asym_fold_and_dock
directory	bb_sampler
directory	bin_transitions
directory	chiral
directory	rational_mc
directory	sidechain_moves

Files
file	AddCavitiesMover.cc
file	AddCavitiesMover.hh
file	AddChainMover.cc
file	AddChainMover.fwd.hh
	Add chain to an existing pose (as a new chain)
file	AddChainMover.hh
	switch the chain order
file	AddChainMoverCreator.hh
file	AddJobPairData.cc
	A really simple mover that takes some data in through xml and appends it to the pose.
file	AddJobPairData.fwd.hh
	Forward Header file for the AddJobPairData Mover.
file	AddJobPairData.hh
	Header file for the AddJobPairData Mover.
file	AddJobPairDataCreator.hh
	MoverCreator definitions for the AddJobPairData mover.
file	AddPDBInfoMover.cc
file	AddPDBInfoMover.fwd.hh
	Forward header file for AddPDBInfoMover.
file	AddPDBInfoMover.hh
file	AddPDBInfoMoverCreator.hh
file	AddResidueLabelMover.cc
file	AddResidueLabelMover.fwd.hh
file	AddResidueLabelMover.hh
file	AddResidueLabelMoverCreator.hh
	This class will create instances of AddResidueLabelMover for the MoverFactory.
file	AlignChainMover.cc
file	AlignChainMover.fwd.hh
file	AlignChainMover.hh
	switch the chain order
file	AlignChainMoverCreator.hh
file	BackboneMover.cc
	Method definitions for SmallMover and ShearMover.
file	BackboneMover.fwd.hh
	BackboneMover forward declarations header.
file	BackboneMover.hh
	Declarations and simple accessor/mutator definitions for SmallMover and ShearMover.
file	BackboneMoverCreator.hh
	This class will create instances of protocols::moves::Movers SmallMover and ShearMover for the protocols::moves::MoverFactory.
file	BBConRotMover.cc
file	BBConRotMover.fwd.hh
file	BBConRotMover.hh
file	BBDihedralSamplerMover.cc
file	BBDihedralSamplerMover.fwd.hh
	Mover interface to BBDihedralSampler.
file	BBDihedralSamplerMover.hh
	Mover interface to BBDihedralSampler.
file	BBDihedralSamplerMoverCreator.hh
	Mover interface to BBDihedralSampler.
file	BBGaussianMover.cc
file	BBGaussianMover.fwd.hh
	Gaussian Perturbation to backbone.
file	BBGaussianMover.hh
file	BBGaussianMoverCreator.hh
file	ChainSplitMover.cc
file	ChainSplitMover.fwd.hh
	Forward declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
file	ChainSplitMover.hh
	Declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
file	ChangeAndResetFoldTreeMover.cc
file	ChangeAndResetFoldTreeMover.fwd.hh
file	ChangeAndResetFoldTreeMover.hh
	Basic Mover used for setting up atomic protocols.
file	ChangeAndResetFoldTreeMoverCreator.hh
file	CombinePoseMover.cc
file	CombinePoseMover.fwd.hh
file	CombinePoseMover.hh
file	ConcatenatePosesMover.cc
	links supplied Poses by their termini
file	ConcatenatePosesMover.fwd.hh
	links supplied Poses by their termini
file	ConcatenatePosesMover.hh
	links supplied Poses by their termini
file	ConcatenatePosesMoverCreator.hh
	links supplied Poses by their termini
file	ConstrainToIdealMover.cc
	Adds to your pose constraints suitable for idealization of bond lengths and angles.
file	ConstrainToIdealMover.fwd.hh
	ConstrainToIdealMover forward declarations header.
file	ConstrainToIdealMover.hh
	Adds to your pose constraints suitable for idealization of bond lengths and angles.
file	ContingentAcceptMover.cc
file	ContingentAcceptMover.fwd.hh
	switch the chain order
file	ContingentAcceptMover.hh
	switch the chain order
file	ContingentAcceptMoverCreator.hh
file	ConvertRealToVirtualMover.cc
	Mover for switching a residue type to all virtual.
file	ConvertRealToVirtualMover.fwd.hh
	Mover for switching a residue type to all virtual.
file	ConvertRealToVirtualMover.hh
	Mover for switching a residue type to all virtual.
file	ConvertRealToVirtualMoverCreator.hh
	Mover for switching a residue type to all virtual.
file	ConvertVirtualToRealMover.cc
	Mover for switching virtual residues back to real residues.
file	ConvertVirtualToRealMover.fwd.hh
	Mover for switching virtual residues back to real residues.
file	ConvertVirtualToRealMover.hh
	Mover for switching virtual residues back to real residues.
file	ConvertVirtualToRealMoverCreator.hh
file	CopyDofMover.cc
file	CopyDofMover.fwd.hh
file	CopyDofMover.hh
file	CopyRotamerMover.cc
	A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
file	CopyRotamerMover.fwd.hh
	A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
file	CopyRotamerMover.hh
	A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
file	CopyRotamerMoverCreator.hh
	A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
file	CoupledMover.cc
	implementation of CoupledMover class and functions
file	CoupledMover.fwd.hh
file	CoupledMover.hh
	definition of CoupledMover class and functions
file	CoupledMoverCreator.hh
	This class will create instances of protocols::moves::Mover CoupledMover for the protocols::moves::MoverFactory.
file	CutChainMover.cc
file	CutChainMover.fwd.hh
file	CutChainMover.hh
file	CutChainMoverCreator.hh
file	CyclizationMover.cc
file	CyclizationMover.fwd.hh
file	CyclizationMover.hh
	Implimentation file for CyclizationMover.
file	DeleteChainMover.cc
file	DeleteChainMover.fwd.hh
	Add chain to an existing pose (as a new chain)
file	DeleteChainMover.hh
	Delete the chain specified by chain number.
file	DeleteChainMoverCreator.hh
file	DeleteChainsMover.cc
file	DeleteChainsMover.fwd.hh
	Forward declations for DeleteChainsMover.
file	DeleteChainsMover.hh
	Delete a chain from a pose.
file	DeleteChainsMoverCreator.hh
	Declaration of the protocols::moves::MoverCreator class for the DeleteChainsMover.
file	DisulfideInsertionMover.cc
	a mover that closes a receptor bound peptide by an added disulfide bond
file	DisulfideInsertionMover.fwd.hh
	Forward header file for DisulfideInsertionMover.
file	DisulfideInsertionMover.hh
	Header file for DisulfideInsertionMover.
file	DisulfideInsertionMoverCreator.cc
	Creator class for DisulfideInsertionMover.
file	DisulfideInsertionMoverCreator.fwd.hh
	Creator class for DisulfideInsertionMover.
file	DisulfideInsertionMoverCreator.hh
	Creator class for DisulfideInsertionMover.
file	DME_FilterMover.cc
file	DME_FilterMover.hh
file	DOFHistogramRecorder.cc
file	DOFHistogramRecorder.fwd.hh
	Forward declarations for class DOFHistogramRecorder.
file	DOFHistogramRecorder.hh
file	DumpPdb.cc
file	DumpPdb.fwd.hh
	Forward header file for DumpPdb.
file	DumpPdb.hh
file	DumpPdbCreator.hh
file	DumpSingleResidueRotamers.cc
	Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
file	DumpSingleResidueRotamers.fwd.hh
	Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
file	DumpSingleResidueRotamers.hh
	Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
file	DumpSingleResidueRotamersCreator.hh
	Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
file	ExplicitWaterMover.cc
	add explicit water molecules to surface of biomolecule
file	ExplicitWaterMover.fwd.hh
file	ExplicitWaterMover.hh
file	ExplicitWaterMoverCreator.hh
file	FavorSequenceProfile.cc
	Add a SequenceProfileConstraint to a pose.
file	FavorSequenceProfile.hh
	Add a SequenceProfileConstraint to a pose.
file	FavorSequenceProfileCreator.hh
	Declaration of the protocols::moves::MoverCreator class for the FavorSequenceProfile.
file	FavorSymmetricSequence.cc
	apply constraints to enforce a symmetric sequence
file	FavorSymmetricSequence.fwd.hh
	apply constraints to enforce a symmetric sequence
file	FavorSymmetricSequence.hh
	apply constraints to enforce a symmetric sequence
file	FavorSymmetricSequenceCreator.hh
	apply constraints to enforce a symmetric sequence
file	FragmentMover.cc
file	FragmentMover.fwd.hh
file	FragmentMover.hh
file	GunnCost.cc
file	GunnCost.hh
file	LoadUnboundRotMover.cc
	LoadUnboundRotMover methods implemented.
file	LoadUnboundRotMover.fwd.hh
file	LoadUnboundRotMover.hh
file	LoadUnboundRotMoverCreator.hh
file	MembraneTopology.cc
file	MembraneTopology.fwd.hh
file	MembraneTopology.hh
file	MembraneTopologyCreator.hh
file	MissingDensityToJumpMover.cc
	Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
file	MissingDensityToJumpMover.fwd.hh
	Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
file	MissingDensityToJumpMover.hh
file	ModifyVariantTypeMover.cc
	Modify variant type to residues.
file	ModifyVariantTypeMover.fwd.hh
file	ModifyVariantTypeMover.hh
file	ModifyVariantTypeMoverCreator.hh
file	MutateResidue.cc
file	MutateResidue.fwd.hh
file	MutateResidue.hh
file	MutateResidueCreator.hh
file	PDBReloadMover.cc
file	PDBReloadMover.fwd.hh
	PDBReloadMover forward declarations header.
file	PDBReloadMover.hh
file	PDBReloadMoverCreator.hh
file	PeriodicBoxMover.cc
	Mover for running liquid simulation (or related other)
file	PeriodicBoxMover.fwd.hh
file	PeriodicBoxMover.hh
	Mover for running liquid simulation (and related others)
file	PeriodicBoxMoverCreator.hh
file	PoseFromPoseResourceMover.cc
	Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
file	PoseFromPoseResourceMover.fwd.hh
	Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
file	PoseFromPoseResourceMover.hh
	Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
file	PoseFromPoseResourceMoverCreator.hh
	Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
file	ProlineFixMover.cc
file	ProlineFixMover.fwd.hh
file	ProlineFixMover.hh
file	PSSM2BfactorMover.cc
file	PSSM2BfactorMover.fwd.hh
	switch the chain order
file	PSSM2BfactorMover.hh
file	PSSM2BfactorMoverCreator.hh
file	RandomOmegaFlipMover.cc
file	RandomOmegaFlipMover.fwd.hh
file	RandomOmegaFlipMover.hh
file	RandomOmegaFlipMoverCreator.hh
	This class will create instances of RandomOmegaFlipMover for the MoverFactory.
file	RandomTorsionMover.cc
file	RandomTorsionMover.fwd.hh
file	RandomTorsionMover.hh
file	RandomTorsionMoverCreator.hh
	This class will create instances of RandomTorsionMover for the MoverFactory.
file	ReportEffectivePKA.cc
file	ReportEffectivePKA.hh
file	ReportEffectivePKACreator.hh
	This class will create instances of Mover ReportEffectivePKA for the MoverFactory.
file	ReportXYZ.cc
file	ReportXYZ.fwd.hh
file	ReportXYZ.hh
	adds the x,y,z of a selected residue to the score function
file	ReportXYZCreator.hh
file	RepulsiveOnlyMover.cc
	calculate repulsive energy only for certain residues
file	RepulsiveOnlyMover.fwd.hh
file	RepulsiveOnlyMover.hh
file	ResetFoldTree.cc
file	ResetFoldTree.fwd.hh
	eliminates the fold tree
file	ResetFoldTree.hh
	wipes out a fold tree making the first residue 0 and the last residue the length of the protein
file	ResetFoldTreeCreator.hh
file	ResetFullModelInfoMover.cc
	Ensure synchronized full model info.
file	ResetFullModelInfoMover.fwd.hh
	Ensure synchronized full model info.
file	ResetFullModelInfoMover.hh
	Ensure synchronized full model info.
file	ResetFullModelInfoMoverCreator.hh
	Ensure synchronized full model info.
file	ResTypeFragmentMover.cc
file	ResTypeFragmentMover.fwd.hh
file	ResTypeFragmentMover.hh
file	ReturnSidechainMover.cc
	ReturnSidechainMover methods implemented.
file	ReturnSidechainMover.fwd.hh
	ReturnSidechainMover forward declarations header.
file	ReturnSidechainMover.hh
	protocols::moves::Mover to "return" proper sidechains to a pose that was temporarily in centroid mode (can be used for any sidechain copying)
file	RingConformationMover.cc
	Method definitions for RingConformationMover.
file	RingConformationMover.fwd.hh
	Forward declarations for RingConformationMover.
file	RingConformationMover.hh
	Declarations and simple accessor/mutator definitions for RingConformationMover.
file	RingConformationMoverCreator.hh
	Method declarations for RingConformationMoverCreator.
file	SaveSequenceToCommentsMover.cc
	Remove constraints from the current pose conformation.
file	SaveSequenceToCommentsMover.fwd.hh
file	SaveSequenceToCommentsMover.hh
	Add constraints to the current pose conformation.
file	SaveSequenceToCommentsMoverCreator.hh
	Declaration of the MoverCreator class for the SaveSequenceToCommentsMover.
file	ScoreMover.cc
	Applies a ScoreFunction to a Pose. Also has CASP and loop modeling features.
file	ScoreMover.fwd.hh
	ScoreMover forward declarations header.
file	ScoreMover.hh
file	ScoreMoverCreator.hh
file	SequenceProfileMover.cc
	moverization of code that was embedded in the parser
file	SequenceProfileMover.fwd.hh
file	SequenceProfileMover.hh
	BS mover to get around a stupid "mover" that was embedded in the parser.
file	SequenceProfileMoverCreator.hh
file	SetTorsion.cc
file	SetTorsion.fwd.hh
file	SetTorsion.hh
	Sets the value of a desired torsion. Header files for the mover.
file	SetTorsionCreator.hh
file	SetupMetalsMover.cc
file	SetupMetalsMover.fwd.hh
	SetupMetalsMover forward declarations header.
file	SetupMetalsMover.hh
	class definition for SetupMetalsMover
file	SetupMetalsMoverCreator.hh
file	ShakeStructureMover.cc
file	ShakeStructureMover.fwd.hh
file	ShakeStructureMover.hh
file	ShortBackrubMover.cc
	implementation of ShortBackrubMover class and functions
file	ShortBackrubMover.fwd.hh
file	ShortBackrubMover.hh
	definition of ShortBackrubMover class and functions
file	ShortBackrubMoverCreator.hh
	This class will create instances of protocols::moves::Mover ShortBackrubMover for the protocols::moves::MoverFactory.
file	SimpleThreadingMover.cc
	Very Simple class for threading a regional sequence onto a structure.
file	SimpleThreadingMover.fwd.hh
file	SimpleThreadingMover.hh
file	SimpleThreadingMoverCreator.hh
file	SmoothFragmentMover.cc
file	SmoothFragmentMover.fwd.hh
file	SmoothFragmentMover.hh
file	StorePoseSnapshot.cc
	Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state.
file	StorePoseSnapshot.fwd.hh
	Owning pointers and whatnot for the StorePoseSnapshot mover class.
file	StorePoseSnapshot.hh
	Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state. Header files for the mover.
file	StorePoseSnapshotCreator.hh
	This class will create instances of the protocols::simple_moves::StorePoseSnapshot mover for the protocols::moves::MoverFactory.
file	StructProfileMover.cc
file	StructProfileMover.fwd.hh
	Quickly generates a structure profile.
file	StructProfileMover.hh
	Quickly generates a structure profile.
file	StructProfileMoverCreator.hh
file	SuperimposeMover.cc
file	SuperimposeMover.fwd.hh
	SuperimposeMover forward declarations header.
file	SuperimposeMover.hh
file	SuperimposeMoverCreator.hh
file	SwitchChainOrderMover.cc
file	SwitchChainOrderMover.fwd.hh
	switch the chain order
file	SwitchChainOrderMover.hh
	switch the chain order
file	SwitchChainOrderMoverCreator.hh
file	SwitchResidueTypeSetMover.cc
	switch between residue type sets (e.g. centroid and all atom)
file	SwitchResidueTypeSetMover.fwd.hh
	switch between residue type sets (e.g. centroid and all atom)
file	SwitchResidueTypeSetMover.hh
	switch between residue type sets (e.g. centroid and all atom)
file	SwitchResidueTypeSetMoverCreator.hh
file	SymmetricFragmentMover.cc
file	SymmetricFragmentMover.fwd.hh
file	SymmetricFragmentMover.hh
file	TailsScoreMover.cc
file	TailsScoreMover.hh
file	TorsionDOFMover.cc
	TorsionDOFMover methods implemented.
file	TorsionDOFMover.fwd.hh
	TorsionDOFMover forward declarations header.
file	TorsionDOFMover.hh
	TorsionDOFMover header.
file	TorsionSetMover.cc
file	TorsionSetMover.fwd.hh
file	TorsionSetMover.hh
file	Tumble.cc
	Add constraints to the current pose conformation.
file	Tumble.hh
	Declaration of the MoverCreator class for the Tumble.
file	TumbleCreator.hh
file	UniformPositionMover.cc
file	UniformPositionMover.fwd.hh
	Apply a uniform (deterministic move) to a given position.
file	UniformPositionMover.hh
	Apply a uniform (deterministic move) to a given position.
file	VirtualRootMover.cc
	Manipulate virtual roots on poses. This is a seperate mover mainly to be RosettaScriptable.
file	VirtualRootMover.fwd.hh
	VirtualRootMover forward declarations header.
file	VirtualRootMover.hh
	Manipulate virtual roots on poses.
file	VirtualRootMoverCreator.hh
file	WobbleMover.cc
file	WobbleMover.hh
file	WriteFiltersToPose.cc
	Writes all filter results to the pose file.
file	WriteFiltersToPose.fwd.hh
file	WriteFiltersToPose.hh
	Writes all filter results to the pose file.
file	WriteFiltersToPoseCreator.hh
	This class will create instances of Mover WriteFiltersToPose for the MoverFactory.
file	WriteSSEMover.cc
	Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
file	WriteSSEMover.fwd.hh
	Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
file	WriteSSEMover.hh
	Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
file	WriteSSEMoverCreator.hh
	Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.