glycan_clash_check.cc File Reference

#include <devel/init.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/selection.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/chains_util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/carbohydrates/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/chemical/AtomType.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobDistributorFactory.hh>
#include <protocols/jd2/util.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/SilentFileJobOutputter.hh>
#include <protocols/moves/Mover.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/carbohydrates.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <utility/options/OptionCollection.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <cmath>

Classes
class	GlycanClashCheckMover
	Class to print out info specific to glycan poses. Will be expanded as needed. Hope to eventually add it as both a mover and a features reporter. Needs to be completely rewritten. More...

Typedefs
using	GlycanClashCheckMoverOP = utility::pointer::shared_ptr< GlycanClashCheckMover >

Functions
void	register_options ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("glycan_clash_check")

Typedef Documentation

using GlycanClashCheckMoverOP = utility::pointer::shared_ptr<GlycanClashCheckMover>

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::excn::Exception::display(), test.T009_Exceptions::e, devel::init(), in::file::l(), basic::options::option, options, register_options(), in::file::s(), basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

void register_options

(

)

References utility::options::OptionCollection::add_relevant(), basic::options::OptionKeys::carbohydrates::clash_check::check_chains, basic::options::OptionKeys::carbohydrates::clash_check::glycan_branches, basic::options::OptionKeys::in::file::l, basic::options::option, options, and basic::options::OptionKeys::in::file::s.

Referenced by main().

Variable Documentation

basic::Tracer TR("glycan_clash_check")

static