conformation Directory Reference

Directory dependency graph for conformation:

Directories
directory	carbohydrates
directory	membrane
directory	orbitals
directory	parametric
directory	signals
directory	symmetry

Files
file	AbstractRotamerTrie.cc
	Auto-generated serialization template functions.
file	AbstractRotamerTrie.fwd.hh
	Forward declaration of the AbstractRotamerTrie class, defined in the conformation layer.
file	AbstractRotamerTrie.hh
	Base class from which all Tries will derive; this class is a handle for the tries that will be defined in core/scoring, but which have to be stored by the RotamerSetBase class defined in core/conformation.
file	Atom.cc
	Method definitions for conformation::Atom.
file	Atom.fwd.hh
	Class declaration for conformation::Atom.
file	Atom.hh
	Class definitions for conformation::Atom.
file	AtomGraph.cc
file	AtomGraph.fwd.hh
file	AtomGraph.hh
file	AtomGraphData.fwd.hh
file	AtomGraphData.hh
file	Conformation.cc
	Method definitions for the Conformation class.
file	Conformation.fwd.hh
	forward declaration for Conformation.hh
file	Conformation.hh
	conformation container
file	ConformationTests.fwd.hh
file	find_neighbors.fwd.hh
file	find_neighbors.hh
file	PointGraph.cc
	Graph for detecting neighbors; vertices store points, edges store square distances.
file	PointGraph.fwd.hh
	Graph for detecting neighbors; vertices store points, edges store square distances.
file	PointGraph.hh
	Graph for detecting neighbors; vertices store points, edges store square distances.
file	PointGraphData.cc
	Serlialization routines for the two types templated upon to define the PointGraph.
file	PointGraphData.fwd.hh
file	PointGraphData.hh
	classes to work with UpperEdgeGraph for fast neighbor detection
file	ppo_torsion_bin.cc
file	ppo_torsion_bin.fwd.hh
	An enumeration to represent a binning of the phi/psi/omega torsions.
file	ppo_torsion_bin.hh
	Functions for assigning and manipulating the phi/psi/omega torsion bins.
file	PseudoBond.cc
file	PseudoBond.fwd.hh
file	PseudoBond.hh
file	Residue.cc
	Method definitions for the Residue class.
file	Residue.functions.cc
	Implementation of non-member functions that operate on Residue objects.
file	Residue.functions.hh
	Header file for non-member functions that operate on Residue objects.
file	Residue.fwd.hh
file	Residue.hh
	Method declarations and simple accessor definitions for the Residue class.
file	residue_datacache.hh
	enum for storing data in the Residue's datacache
file	ResidueFactory.cc
file	ResidueFactory.hh
file	ResidueKinWriter.cc
	Class to write kinemage-formatted output for Residue and Conformation.
file	ResidueKinWriter.fwd.hh
file	ResidueKinWriter.hh
	Class to write kinemage-formatted output for Residue and Conformation.
file	ResidueMatcher.cc
file	ResidueMatcher.fwd.hh
file	ResidueMatcher.hh
file	RotamerSetBase.cc
	RotamerSetBase class implementation.
file	RotamerSetBase.fwd.hh
file	RotamerSetBase.hh
	Abstract base class for a class that holds disembodied Residues (ie not contained within a Pose) as Rotamers.
file	RotamerSetCacheableDataType.hh
	enum for the DataCache within the RotamerSet class; EnergyMethods in core/scoring forward-declare themselves here if they intend to cache data within the the RotamerSet.
file	UltraLightResidue.cc
file	UltraLightResidue.fwd.hh
file	UltraLightResidue.hh
	an extremely light residue class used for fast direct cartesian space transforms on ligands.
file	util.cc
file	util.hh