helical_bundle_predict Directory Reference

Directory dependency graph for helical_bundle_predict:

Files
file	HBP_FinalFullatomRefinementMoveGenerator.cc
	A class to generate ParsedProtocols for the final full-atom refinement step.
file	HBP_FinalFullatomRefinementMoveGenerator.fwd.hh
	A class to generate ParsedProtocols for the final full-atom refinement step.
file	HBP_FinalFullatomRefinementMoveGenerator.hh
	A class to generate ParsedProtocols for the final full-atom refinement step.
file	HBP_HelixCoilMoveGenerator.cc
	A class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose. This version uses helix-coil transition theory to nucleate and extend helices.
file	HBP_HelixCoilMoveGenerator.fwd.hh
	A class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose. This version uses helix-coil transition theory to nucleate and extend helices.
file	HBP_HelixCoilMoveGenerator.hh
	A class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose. This version uses helix-coil transition theory to nucleate and extend helices.
file	HBP_MoveGenerator.cc
	A base class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose.
file	HBP_MoveGenerator.fwd.hh
	A base class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose.
file	HBP_MoveGenerator.hh
	A base class for a module to generate ParsedProtocols for the next move in a Monte Carlo trajectory, based on the current state of the pose.
file	HBP_SigmoidalTemperatureScheduleGenerator.cc
	A class to generate a temperature ramping scheme for a simulated annealing trajectory. This version ramps sigmoidally.
file	HBP_SigmoidalTemperatureScheduleGenerator.fwd.hh
	A class to generate a temperature ramping scheme for a simulated annealing trajectory. This version ramps sigmoidally.
file	HBP_SigmoidalTemperatureScheduleGenerator.hh
	A class to generate a temperature ramping scheme for a simulated annealing trajectory. This version ramps sigmoidally.
file	HBP_TemperatureScheduleGenerator.cc
	A base class to generate a temperature ramping scheme for a simulated annealing trajectory.
file	HBP_TemperatureScheduleGenerator.fwd.hh
	A base class to generate a temperature ramping scheme for a simulated annealing trajectory.
file	HBP_TemperatureScheduleGenerator.hh
	A base class to generate a temperature ramping scheme for a simulated annealing trajectory.
file	HBPHelixAssignments.cc
	A class for storing the helix assignments for a pose. This can represent those proposed from an input file, or those at the current state of a trajectory.
file	HBPHelixAssignments.fwd.hh
	A class for storing the helix assignments for a pose. This can represent those proposed from an input file, or those at the current state of a trajectory.
file	HBPHelixAssignments.hh
	A class for storing the helix assignments for a pose. This can represent those proposed from an input file, or those at the current state of a trajectory.
file	HelicalBundlePredictApplication.cc
	The meat-and-potatoes for the helical_bundle_predict application, used to predict structures of helical bundles made from canonical or noncanonical building-blocks.
file	HelicalBundlePredictApplication.fwd.hh
	The meat-and-potatoes for the helical_bundle_predict application, used to predict structures of helical bundles made from canonical or noncanonical building-blocks.
file	HelicalBundlePredictApplication.hh
	The meat-and-potatoes for the helical_bundle_predict application, used to predict structures of helical bundles made from canonical or noncanonical building-blocks.
file	HelicalBundlePredictApplication_MPI.cc
	MPI implementation of HelicalBundlePredictApplication.
file	HelicalBundlePredictApplication_MPI.fwd.hh
	MPI implementation of HelicalBundlePredictApplication.
file	HelicalBundlePredictApplication_MPI.hh
	MPI implementation of HelicalBundlePredictApplication.