pack Directory Reference

Directory dependency graph for pack:

Directories
directory	annealer
directory	dunbrack
directory	guidance_scoreterms
directory	hbonds
directory	interaction_graph
directory	palette
directory	rotamer_set
directory	rotamers
directory	scmin
directory	task

Files
file	make_symmetric_task.cc
file	make_symmetric_task.hh
	utility functions for handling with symmetric conformations
file	min_pack.cc
	pack rotamers with minimization module
file	min_pack.hh
	pack and minimize sidechains
file	optimizeH.cc
	standard hydrogen optimization subroutine
file	optimizeH.hh
	declaration of standard hydrogen optimization subroutine
file	pack_missing_sidechains.cc
	function to fix missing sidechains in input PDBs (especially those surface lysines that get sidechain-backbone clashes!)
file	pack_missing_sidechains.hh
	header for subroutine to run rotamer trials on residues missing sidechain density in a PDB
file	pack_rotamers.cc
	pack rotamers module
file	pack_rotamers.hh
	pack rotamers module header
file	packer_neighbors.cc
	creates a graph that describes the possible connectivity induced by designing-in larger side chains
file	packer_neighbors.hh
	creates a graph that describes the possible connectivity induced by designing-in larger side chains
file	rotamer_trials.cc
	rotamer trials module
file	rotamer_trials.hh
	rotamer trials module header
file	rtmin.cc
	rotamer trials with minimization module header. Originally concieved of and implemented in Rosetta++ by Chu Wang.
file	rtmin.hh
	rotamer trials with minimization module header
file	util.cc
	Simple utilities for computing rotamer recovery between 2 poses.
file	util.hh
	Simple utilities for computing rotamer recovery between 2 poses.