trRosetta Namespace Reference

Functions
BooleanOptionKey const	trRosetta ("trRosetta")
FileOptionKey const	msa_file ("trRosetta:msa_file")
BooleanOptionKey const	use_distance_constraints ("trRosetta:use_distance_constraints")
BooleanOptionKey const	use_omega_constraints ("trRosetta:use_omega_constraints")
BooleanOptionKey const	use_theta_constraints ("trRosetta:use_theta_constraints")
BooleanOptionKey const	use_phi_constraints ("trRosetta:use_phi_constraints")
RealOptionKey const	distance_constraint_prob_cutoff ("trRosetta:distance_constraint_prob_cutoff")
RealOptionKey const	omega_constraint_prob_cutoff ("trRosetta:omega_constraint_prob_cutoff")
RealOptionKey const	theta_constraint_prob_cutoff ("trRosetta:theta_constraint_prob_cutoff")
RealOptionKey const	phi_constraint_prob_cutoff ("trRosetta:phi_constraint_prob_cutoff")
StringOptionKey const	backbone_randomization_mode ("trRosetta:backbone_randomization_mode")
StringOptionKey const	backbone_minimization_mode ("trRosetta:backbone_minimization_mode")
RealOptionKey const	cis_peptide_prob_non_prepro ("trRosetta:cis_peptide_prob_non_prepro")
RealOptionKey const	cis_peptide_prob_prepro ("trRosetta:cis_peptide_prob_prepro")
FileOptionKey const	scorefxn0 ("trRosetta:scorefxn0")
FileOptionKey const	scorefxn1 ("trRosetta:scorefxn1")
FileOptionKey const	scorefxn2 ("trRosetta:scorefxn2")
FileOptionKey const	scorefxn3 ("trRosetta:scorefxn3")
FileOptionKey const	scorefxn_fullatom ("trRosetta:scorefxn_fullatom")
BooleanOptionKey const	mutate_gly_to_ala ("trRosetta:mutate_gly_to_ala")
BooleanOptionKey const	fullatom_refinement ("trRosetta:fullatom_refinement")
RealOptionKey const	distance_constraint_weight ("trRosetta:distance_constraint_weight")
RealOptionKey const	phi_constraint_weight ("trRosetta:phi_constraint_weight")
RealOptionKey const	omega_constraint_weight ("trRosetta:omega_constraint_weight")
RealOptionKey const	theta_constraint_weight ("trRosetta:theta_constraint_weight")

Function Documentation

StringOptionKey const trRosetta::backbone_minimization_mode

(

"trRosetta:backbone_minimization_mode"

)

StringOptionKey const trRosetta::backbone_randomization_mode

(

"trRosetta:backbone_randomization_mode"

)

RealOptionKey const trRosetta::cis_peptide_prob_non_prepro

(

"trRosetta:cis_peptide_prob_non_prepro"

)

RealOptionKey const trRosetta::cis_peptide_prob_prepro

(

"trRosetta:cis_peptide_prob_prepro"

)

RealOptionKey const trRosetta::distance_constraint_prob_cutoff

(

"trRosetta:distance_constraint_prob_cutoff"

)

RealOptionKey const trRosetta::distance_constraint_weight

(

"trRosetta:distance_constraint_weight"

)

BooleanOptionKey const trRosetta::fullatom_refinement

(

"trRosetta:fullatom_refinement"

)

FileOptionKey const trRosetta::msa_file

(

"trRosetta:msa_file"

)

BooleanOptionKey const trRosetta::mutate_gly_to_ala

(

"trRosetta:mutate_gly_to_ala"

)

RealOptionKey const trRosetta::omega_constraint_prob_cutoff

(

"trRosetta:omega_constraint_prob_cutoff"

)

RealOptionKey const trRosetta::omega_constraint_weight

(

"trRosetta:omega_constraint_weight"

)

RealOptionKey const trRosetta::phi_constraint_prob_cutoff

(

"trRosetta:phi_constraint_prob_cutoff"

)

RealOptionKey const trRosetta::phi_constraint_weight

(

"trRosetta:phi_constraint_weight"

)

FileOptionKey const trRosetta::scorefxn0

(

"trRosetta:scorefxn0"

)

FileOptionKey const trRosetta::scorefxn1

(

"trRosetta:scorefxn1"

)

FileOptionKey const trRosetta::scorefxn2

(

"trRosetta:scorefxn2"

)

FileOptionKey const trRosetta::scorefxn3

(

"trRosetta:scorefxn3"

)

FileOptionKey const trRosetta::scorefxn_fullatom

(

"trRosetta:scorefxn_fullatom"

)

RealOptionKey const trRosetta::theta_constraint_prob_cutoff

(

"trRosetta:theta_constraint_prob_cutoff"

)

RealOptionKey const trRosetta::theta_constraint_weight

(

"trRosetta:theta_constraint_weight"

)

BooleanOptionKey const trRosetta::trRosetta

(

"trRosetta"

)

BooleanOptionKey const trRosetta::use_distance_constraints

(

"trRosetta:use_distance_constraints"

)

BooleanOptionKey const trRosetta::use_omega_constraints

(

"trRosetta:use_omega_constraints"

)

BooleanOptionKey const trRosetta::use_phi_constraints

(

"trRosetta:use_phi_constraints"

)

BooleanOptionKey const trRosetta::use_theta_constraints

(

"trRosetta:use_theta_constraints"

)