drrafter_rna Namespace Reference

Functions
def	get_density_per_residue
def	write_flags_extend_last_round
def	write_command_file
def	setup_next_round

Variables
tuple	parser = argparse.ArgumentParser(description="")
tuple	args = parser.parse_args()
	output_tag = args.outfile_basename,
	do_not_recalc_convergence = args.last_round,
	skip_clash_check = args.dens_thr,
	final_round_2 = args.rosetta_directory)

Function Documentation

def drrafter_rna.get_density_per_residue	(		model,
			density_map
	)

References basic::database.open(), and binder.replace().

Referenced by setup_next_round().

def drrafter_rna.setup_next_round	(		models,
			last_flags,
			output_tag,
			outfile_basename,
			do_not_recalc_convergence = False,
			last_round = False,
			skip_clash_check = False,
			dens_thr = -1.0,
			nstruct = 0,
			chunk_res = [],
			final_round_2 = False,
			map_to_use = '',
			rosetta_dir = '',
			rosetta_ext = '',
			test = False
	)

References DRRAFTER_util.better_reorder_pdb(), basic::options::OptionKeys::stepwise.enumerate, utility::options::OptionKeys::options.exit, get_density_per_residue(), DRRAFTER_util.graph_from_ss(), ObjexxFCL.len(), basic::options::OptionKeys::in::file.list, basic::database.open(), DRRAFTER_util.pdbslice(), fmt.print(), basic::options::OptionKeys::relax::range.range, binder.replace(), binder.split(), write_command_file(), and write_flags_extend_last_round().

Referenced by auto-DRRAFTER_setup_next_round.figure_out_next_round(), and write_command_file().

def drrafter_rna.write_command_file	(		command_file_name,
			flags_file,
			rosetta_dir,
			rosetta_ext
	)

References basic::database.open(), and setup_next_round().

Referenced by setup_next_round().

def drrafter_rna.write_flags_extend_last_round	(		outfile_basename,
			output_tag,
			last_flags,
			last_round,
			nstruct,
			test
	)

References basic::database.open().

Referenced by setup_next_round().

Variable Documentation

tuple drrafter_rna.args = parser.parse_args()

drrafter_rna.do_not_recalc_convergence = args.last_round,

drrafter_rna.final_round_2 = args.rosetta_directory)

drrafter_rna.output_tag = args.outfile_basename,

Referenced by add_rosetta_options_0(), and main().

tuple drrafter_rna.parser = argparse.ArgumentParser(description="")

drrafter_rna.skip_clash_check = args.dens_thr,