- i -

• identify_targeted_positions() : incorporate_motifs.cc
• import_and_dump_pdb() : swa_rna_util.cc
• increment_asymm_unit_recursively() : count_cycpep_sequences.cc
• increment_sequence() : count_cycpep_sequences.cc
• info() : Svm.cc
• init_usage_prompt() : remodel.cc , sequence_recovery.cc , mp_seqrecov.cc
• initialize_native_pose() : swa_protein_main.cc
• initialize_peptide() : pepspec.cc
• INPUT_PATH() : test_coenzymes.cc , test_explicit_membrane_input.cc
• insert_stage_tag() : multistage_rosetta_scripts.cc
• instantiate() : T20.template.hpp
• instantiate_templates() : T15.inner_class.hpp
• interface_residue_ddg() : pocket_suggest_target_residues_by_ddg.cc
• interface_rmsd() : minimize_ppi.cc
• invariants_for_cyclic_permutation() : count_cycpep_sequences.cc
• invert_value() : count_cycpep_sequences.cc
• is_deletable() : ResidueType.bench.hh
• is_interface_heavyatom() : minimize_ppi.cc
• is_interface_residue() : pocket_suggest_target_residues_by_ddg.cc
• is_semi_rot() : torsional_potential_corrections.cc
• is_subset() : rna_graft.cc
• isBoundary() : design_contrast_and_statistic.cc
• isBuried() : design_contrast_and_statistic.cc
• isHydroNonPolar() : design_contrast_and_statistic.cc
• isNegative() : design_contrast_and_statistic.cc
• isPolarUncharge() : design_contrast_and_statistic.cc
• isPositive() : design_contrast_and_statistic.cc