mixedMC.cc File Reference

#include <iostream>
#include <core/io/raw_data/ScoreFileData.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <protocols/jobdist/Jobs.hh>
#include <protocols/jobdist/JobDistributors.hh>
#include <protocols/jobdist/standard_mains.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/pointer/memory.hh>
#include <numeric/random/random.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/docking.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/util.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <protocols/docking/metrics.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MixedMonteCarlo.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/moves/PyMOLMover.hh>
#include <devel/init.hh>
#include <map>
#include <fstream>
#include <string>

Functions
static core::Size	trans (1)
static core::Size	rot (2)
utility::vector1_int	get_movable_jumps (core::pose::Pose &pose, std::string partner_chain_info)
int	main (int argc, char **argv)

Variables
static basic::Tracer	TR ("MixedMonteCarloApp")

Function Documentation

get_movable_jumps()

utility::vector1_int get_movable_jumps	(	core::pose::Pose &	pose,
		std::string	partner_chain_info
	)

References chain_begin(), chain_end(), utility::io::oc::cout, loops::cutpoint, create_a3b_hbs::f, create_a3b_hbs::i, create_a3b_hbs::pdb_info, and beta_nonlocal::pose.

Referenced by main().

main()

int main	(	int	argc,
		char **	argv
	)

References basic::options::OptionKeys::out::path::all, argv, basic::options::OptionKeys::relax::bb_move, utility::io::oc::cout, pyrosetta::create_score_function, basic::options::OptionKeys::matdes::dock::dock, docking::dock_jump, basic::options::OptionKeys::docking::dock_pert, basic::options::OptionKeys::docking::docking, test.T009_Exceptions::e, lactamize::filename, basic::options::OptionKeys::optE::fixed, numeric::random::gaussian(), get_movable_jumps(), create_a3b_hbs::i, basic::init(), test.Workshop4test::low_pose, basic::options::OptionKeys::score::lowres_weights, beta_nonlocal::mm, basic::options::OptionKeys::in::file::native, local::nstruct, basic::options::OptionKeys::out::nstruct, basic::options::option, erraser_single_res_analysis::out, basic::options::OptionKeys::docking::partners, closure_error::path, pyrosetta.distributed.io::pose_from_file, rot(), basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::out::file::scorefile, tag, trans(), basic::options::OptionKeys::in::tuning_param, numeric::random::uniform(), and basic::options::OptionKeys::inout::dbms::user.

rot()

static core::Size rot

(

2

)

Referenced by main().

trans()

static core::Size trans ( 1  )

static

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("MixedMonteCarloApp") ( "MixedMonteCarloApp"  )

static