VallReader Class Reference

Public Member Functions
	VallReader (utility::file::FileName const &fn)
std::string	get_line (Size idx) const
Size	size () const
core::sequence::SequenceOP	make_nmer_profile (Size idx, Size size, bool &err)
utility::vector1< std::string >	make_fragment_lines (Size idx, Size size)

Private Member Functions
void	read_lines (FileName const &fn)

Private Attributes
utility::vector1< std::string >	lines_

Constructor & Destructor Documentation

VallReader()

VallReader::VallReader ( utility::file::FileName const &  fn )

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn, and read_lines().

Member Function Documentation

get_line()

std::string VallReader::get_line ( Size  idx ) const

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::idx, and lines_.

Referenced by make_fragment_lines(), and make_nmer_profile().

make_fragment_lines()

utility::vector1< std::string > VallReader::make_fragment_lines ( Size  idx, Size  size  )

inline

References aa, predPRE::chain, ObjexxFCL::format::F(), get_line(), create_a3b_hbs::i, test.T110_numeric::I, kmeans_adaptive_kernel_density_bb_dependent_rotlib::idx, line, solution_counts::lines, basic::options::OptionKeys::AnchoredDesign::filters::omega, oop_conformations::phi, oop_conformations::psi, pna::resi, size(), challenge::ss, x, predPRE::y, and predPRE::z.

make_nmer_profile()

core::sequence::SequenceOP VallReader::make_nmer_profile ( Size  idx, Size  size, bool &  err  )

inline

References aa, get_line(), create_a3b_hbs::i, kmeans_adaptive_kernel_density_bb_dependent_rotlib::idx, ObjexxFCL::index(), line, basic::options::OptionKeys::AnchoredDesign::filters::omega, oop_conformations::phi, basic::options::OptionKeys::run::profile, oop_conformations::psi, pna::resi, size(), challenge::ss, x, predPRE::y, and predPRE::z.

read_lines()

void VallReader::read_lines ( FileName const &  fn )

inlineprivate

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn, getline(), gaussian-sampling::input, line, lines_, and utility_exit_with_message.

Referenced by VallReader().

size()

Size VallReader::size ( ) const

inline

References lines_.

Referenced by make_fragment_lines(), and make_nmer_profile().

Member Data Documentation

lines_

utility::vector1< std::string > VallReader::lines_

private

Referenced by get_line(), read_lines(), and size().

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The documentation for this class was generated from the following file:

• src/apps/pilot/james/pick_frags.cc