rna_rosetta_ready_set Namespace Reference

Variables
	file_path = os.path.split( os.path.abspath(__file__) ) [0]
	start_time = time.time()
	input_pdb = parse_options(sys.argv, 'pdb', '')
	Input options#####################################. More...
	out_pdb = parse_options(sys.argv, 'out_pdb', basename(input_pdb).replace('.pdb', '_ready_set.pdb') )
	renumbering = parse_options(sys.argv, 'renumbering', 'False')
	base_dir = os.getcwd()
	File Paths#######################################################. More...
string	temp_file = '%s/%s_temp_rs.pdb' % (base_dir, basename(input_pdb).replace('.pdb', '') )
	total_time = time.time()-start_time

Variable Documentation

base_dir

rna_rosetta_ready_set.base_dir = os.getcwd()

File Paths#######################################################.

file_path

rna_rosetta_ready_set.file_path = os.path.split( os.path.abspath(__file__) ) [0]

input_pdb

rna_rosetta_ready_set.input_pdb = parse_options(sys.argv, 'pdb', '')

Input options#####################################.

out_pdb

rna_rosetta_ready_set.out_pdb = parse_options(sys.argv, 'out_pdb', basename(input_pdb).replace('.pdb', '_ready_set.pdb') )

Referenced by double_helix_test(), helix_ST(), main(), and minimize_and_score().

renumbering

rna_rosetta_ready_set.renumbering = parse_options(sys.argv, 'renumbering', 'False')

start_time

rna_rosetta_ready_set.start_time = time.time()

Referenced by Benchmark.apply(), HBondReporter.apply(), main(), mg_hires_pdbstats_from_pose(), mg_pdbstats_test(), NativeEnsemble.write_job_to_db(), and NativeEnsemble.write_schema_to_db().

temp_file

rna_rosetta_ready_set.temp_file = '%s/%s_temp_rs.pdb' % (base_dir, basename(input_pdb).replace('.pdb', '') )

total_time

rna_rosetta_ready_set.total_time = time.time()-start_time