relax_building_block.cc File Reference

#include <basic/database/open.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/CacheableString.hh>
#include <basic/options/keys/holes.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/parser.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/symmetry/SymDof.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/conformation/symmetry/util.hh>
#include <core/id/AtomID_Map.hh>
#include <core/import_pose/import_pose.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/io/silent/ScoreFileSilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pack/make_symmetric_task.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/packing/compute_holes_score.hh>
#include <core/scoring/packing/HolesParams.hh>
#include <core/scoring/packstat/compute_sasa.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/sasa.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/types.hh>
#include <fstream>
#include <iostream>
#include <math.h>
#include <numeric/random/random.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/format.hh>
#include <protocols/docking/util.hh>
#include <protocols/jobdist/not_universal_main.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/minimization_packing/symmetry/SymPackRotamersMover.hh>
#include <protocols/minimization_packing/symmetry/SymMinMover.hh>
#include <protocols/viewer/viewers.hh>
#include <sstream>
#include <string>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/mpistream.hh>
#include <utility/string_util.hh>
#include <core/scoring/sc/ShapeComplementarityCalculator.hh>
#include <protocols/relax/FastRelax.hh>
#include <core/scoring/constraints/ResidueTypeConstraint.hh>

Typedefs
typedef numeric::xyzVector< Real >	Vec
typedef numeric::xyzMatrix< Real >	Mat
typedef vector1< Size >	Sizes

Functions
void *	dostuff (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("relax_building_block")

Typedef Documentation

Mat

typedef numeric::xyzMatrix<Real> Mat

Sizes

typedef vector1<Size> Sizes

Vec

typedef numeric::xyzVector<Real> Vec

Function Documentation

dostuff()

void* dostuff

(

void *

)

References extract_scores(), evaluate_beta_mutants::file, kmeans_adaptive_kernel_density_bb_dependent_rotlib::fn, create_a3b_hbs::i, subloop_histogram::iterator, make_symmdef_file_denovo::jump_num, out::file::o(), basic::options::option, option, erraser_single_res_analysis::out, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, in::file::s(), basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::out::sf, sfd, ObjexxFCL::string_of(), basic::options::OptionKeys::symmetry::symmetry, TR, numeric::random::uniform(), and utility_exit_with_message.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, dostuff(), test.T009_Exceptions::e, func, basic::init(), basic::options::option, basic::options::OptionKeys::parser::view, and viewer_main().

Variable Documentation

TR

basic::Tracer TR("relax_building_block") ( "relax_building_block"  )

static

Referenced by dostuff().