apl_msd.cc File Reference

Multistate design executable as written by apl. More...

#include <devel/pack_daemon/EntityCorrespondence.hh>
#include <devel/pack_daemon/MultistateAggregateFunction.hh>
#include <devel/pack_daemon/MultistateFitnessFunction.hh>
#include <devel/pack_daemon/PackDaemon.hh>
#include <devel/init.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <basic/Tracer.hh>
#include <protocols/genetic_algorithm/Entity.hh>
#include <protocols/genetic_algorithm/EntityRandomizer.hh>
#include <protocols/genetic_algorithm/GeneticAlgorithm.hh>
#include <protocols/multistate_design/util.hh>
#include <utility/string_util.hh>
#include <basic/options/keys/ms.OptionKeys.gen.hh>

Classes
class	SimpleDGBindAggregateFunction

Functions
int	main (int argc, char **argv)

Variables
static basic::Tracer	TR ("app.andrew.apl_msd", t_info)

Detailed Description

Multistate design executable as written by apl.

Application for determining the fingerprint for a score function and for comparing against an existing fingerprint.

Massively multithreaded multistate design protocol.

Author

Andrew Leaver-Fay (aleav.nosp@m.erfa.nosp@m.y@gma.nosp@m.il.c.nosp@m.om)

Andrew Leaver-Fay (aleav.nosp@m.erfa.nosp@m.y@gma.nosp@m.il.c.nosp@m.om)

Phil Bradley ()

Brian Weitzner

Function Documentation

main()

int main	(	int	argc,
		char **	argv
	)

References argv, demo.D060_Folding::counter, test.T009_Exceptions::e, end, ms::fraction_by_recombination(), func, ms::generations(), create_a3b_hbs::ii, basic::init(), basic::options::OptionKeys::in::file::list, ms::mutate_rate(), ms::numresults(), option, ms::pop_size(), basic::options::OptionKeys::mp::assembly::poses, test.T120_core::sfxn, subloop_histogram::size, basic::t_info, utility::to_string(), and TR.

Variable Documentation

TR

basic::Tracer TR("app.andrew.apl_msd", t_info) ( "app.andrew.apl_msd"  , t_info    )

static

Referenced by main().