fragment_sequence_quality.cc File Reference

#include <core/conformation/Conformation.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FrameIteratorWorker_.hh>
#include <core/fragment/FragID_Iterator.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/OrderedFragSet.hh>
#include <core/fragment/FragData.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/Stub.hh>
#include <core/kinematics/RT.hh>
#include <core/fragment/util.hh>
#include <basic/Tracer.hh>
#include <protocols/jumping/JumpSample.hh>
#include <protocols/jumping/JumpSetup.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <core/scoring/rms_util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/pose/Pose.hh>
#include <devel/init.hh>
#include <core/chemical/ChemicalManager.hh>
#include <numeric/angle.functions.hh>
#include <numeric/conversions.hh>
#include <basic/options/option.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/options/option_macros.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <protocols/toolbox/Cluster.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/util.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <numeric/xyz.functions.hh>
#include <ObjexxFCL/format.hh>
#include <boost/tuple/tuple.hpp>
#include <boost/tuple/tuple_comparison.hpp>
#include <utility/excn/Exceptions.hh>

Classes
class	ThisApplication

Functions
int	main (int argc, char **argv)

Variables
static basic::Tracer	tr ("main")

Detailed Description

Author

Function Documentation

main()

int main	(	int	argc,
		char **	argv
	)

References argv, data, test.T009_Exceptions::e, create_a3b_hbs::f, numeric::kinematic_closure::frame(), create_a3b_hbs::i, basic::init(), subloop_histogram::iterator, ObjexxFCL::format::LJ(), in::file::native(), surface_app::native, option, erraser_single_res_analysis::out, pyrosetta.distributed.io::pose_from_file, ThisApplication::register_options(), ObjexxFCL::format::RJ(), and create_a3b_hbs::test_pose.

Variable Documentation

tr

basic::Tracer tr("main") ( "main"  )

static