cyclic_pack.cc File Reference

#include <protocols/moves/Mover.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/PyMOLMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/simple_moves/ScoreMover.hh>
#include <protocols/simple_moves/CyclizationMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueType.hh>
#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/cyclization.OptionKeys.gen.hh>
#include <sstream>

Classes
class	PeptoidDihedralGrabber

Typedefs
typedef utility::pointer::owning_ptr< PeptoidDihedralGrabber >	PeptoidDihedralGrabberOP

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("PeptoidDihedralGrabber")
basic::options::BooleanOptionKey const	cyclic ("cyclic")

Typedef Documentation

PeptoidDihedralGrabberOP

typedef utility::pointer::owning_ptr< PeptoidDihedralGrabber > PeptoidDihedralGrabberOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::cyclization::chains_to_cyclize, pyrosetta::create_score_function, cyclic, create_a3b_hbs::i, basic::init(), option, PeptoidDihedralGrabber::PeptoidDihedralGrabber(), test.C001_Carbohydrates_Demo01::pm, subloop_histogram::size, sm, test.G200_Module_Region::tf, TR, basic::options::OptionKeys::inout::dbms::user, and value.

Variable Documentation

cyclic

basic::options::BooleanOptionKey const cyclic("cyclic")

(

"cyclic"

)

Referenced by checkresiduecount(), create_loop(), do_initial_checks(), main(), OPT_KEY(), register_options(), sample_near_current_torsion(), and set_up_pose().

TR

basic::Tracer TR("PeptoidDihedralGrabber") ( "PeptoidDihedralGrabber"  )

static

Referenced by PeptoidDihedralGrabber::apply(), and main().