loophash.cc File Reference

#include <protocols/jd2/JobDistributor.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <basic/Tracer.hh>
#include <core/scoring/rms_util.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <devel/init.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/relax/FastRelax.fwd.hh>
#include <protocols/match/Hit.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <utility>
#include <utility/exit.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/excn/Exceptions.hh>
#include <protocols/loophash/LoopHashLibrary.fwd.hh>
#include <protocols/loophash/LoopHashLibrary.hh>
#include <protocols/loophash/LoopHashSampler.hh>
#include <protocols/loophash/LocalInserter.hh>
#include <protocols/loophash/BackboneDB.hh>
#include <protocols/loops/Loops.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/lh.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/silent/ProteinSilentStruct.tmpl.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <utility/vector1.hh>

Classes
class	LoopHashRelax_Sampler

Typedefs
using	LoopHashRelax_SamplerOP = utility::pointer::shared_ptr< LoopHashRelax_Sampler >
using	LoopHashRelax_SamplerCOP = utility::pointer::shared_ptr< const LoopHashRelax_Sampler >

Functions
void	run_sandbox (LoopHashLibraryOP)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("main")

Typedef Documentation

LoopHashRelax_SamplerCOP

using LoopHashRelax_SamplerCOP = utility::pointer::shared_ptr<const LoopHashRelax_Sampler>

LoopHashRelax_SamplerOP

using LoopHashRelax_SamplerOP = utility::pointer::shared_ptr<LoopHashRelax_Sampler>

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, lh::create_db(), test.T009_Exceptions::e, create_a3b_hbs::i, basic::Tracer::Info, basic::init(), enumerate_junctions::int, loop_hash_library, lh::loopsizes(), option, numeric::random::RandomGenerator::random_range(), numeric::random::rg(), run_sandbox(), lh::sandbox(), options_will::short, TR, and numeric::random::RandomGenerator::uniform().

run_sandbox()

void run_sandbox

(

LoopHashLibraryOP

)

References basic::Tracer::Info, pyrosetta.distributed.io::pose_from_file, challenge::ss, and TR.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("main") ( "main"  )

static

Referenced by LoopHashRelax_Sampler::apply(), main(), and run_sandbox().